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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP107177.1
Sequence
Nucleotide Information
Accession
NZ_CP107177.1
Description
Escherichia coli strain R7 plasmid pR7-S2K78-3, complete sequence
Source
refseq
Topology
circular
Length
4073 bp
GC Content
0.51 %
Created at NCBI
Aug. 14, 2023
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_030707975.1
Assembly Coverage
1474
Biosample
Curated Collection Information
Accession
31158867
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Sweden,Gothenburg
Original Query Type
name
Coordinates (Lat/Lon)
57.71/11.97
Address
Sweden,Gothenburg
ECOSYSTEM
Original Query
Urine,human
Classification
host_associated,urinary_system
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
Collapse all
Expand all
Plasmids from same Biosample
NZ_CP107176.1
NZ_CP107175.1
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based on Mash distance
AP026523.1
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NZ_OW967982.1
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NZ_OW968131.1
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NZ_CP097369.1
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NZ_CP080063.1
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NZ_CP060870.1
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NZ_CP049855.1
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NZ_CP059132.1
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NZ_CP076321.1
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NZ_CP018996.1
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NZ_CP019024.1
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NZ_CP018972.1
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CP016041.1
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NZ_CP058900.1
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NZ_CP039858.1
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NZ_CP036207.1
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NZ_CP023855.1
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NZ_CP023833.1
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NZ_CP031657.1
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NZ_AP017616.1
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NZ_CP135208.1
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NZ_CP135711.1
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NZ_CP135506.1
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NZ_CP059342.1
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NZ_CP133456.1
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NZ_CP058921.1
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NZ_CP121218.1
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NZ_CP107169.1
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NZ_CP107177.1
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NZ_CP107146.1
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NZ_CP132732.1
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NZ_CP124871.1
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NZ_CP124489.1
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CP125049.1
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NZ_CP124446.1
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NZ_CP124505.1
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NZ_CP124440.1
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NZ_CP142948.1
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NZ_CP124381.1
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NZ_CP124336.1
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NZ_OZ040210.1
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NZ_CP150010.1
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NZ_CP148322.1
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NZ_CP145643.1
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NZ_CP142923.1
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NZ_AP022210.1
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NZ_CP054234.1
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NZ_CP142962.1
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NZ_CP142942.1
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NZ_CP142936.1
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CP056360.1
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CP054323.1
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NZ_CP049106.1
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NZ_CP048336.1
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NZ_CP069985.1
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NZ_LR890413.1
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NZ_CP065571.1
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NZ_AP022101.1
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NZ_AP021967.1
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NZ_AP021949.1
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CP099117.1
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NZ_CP103630.1
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NZ_CP121089.1
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CP117208.1
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NZ_OP242284.1
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NZ_CP116163.1
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NZ_CP110992.1
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NZ_CP099758.1
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NZ_CP109881.1
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NZ_CP103473.1
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AP026523.1
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NZ_OW968131.1
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NZ_CP100538.1
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NZ_OW967982.1
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NZ_CP060870.1
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NZ_CP097369.1
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NZ_CP093233.1
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NZ_CP058884.1
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NZ_CP091713.1
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NZ_CP080063.1
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NZ_CP048613.1
See Comparison
CP093117.1
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NZ_CP055172.1
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NZ_CP054167.1
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NZ_CP081886.1
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NZ_CP085072.1
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NZ_CP085078.1
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AP024699.1
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NZ_CP076321.1
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NZ_CP049855.1
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NZ_CP059132.1
See Comparison
NZ_CP018996.1
See Comparison
NZ_CP019024.1
See Comparison
NZ_CP018972.1
See Comparison
NZ_CP018942.1
See Comparison
NZ_CP058900.1
See Comparison
NZ_CP044963.1
See Comparison
NZ_CP036207.1
See Comparison
NZ_CP023855.1
See Comparison
NZ_CP023833.1
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NZ_CP135711.1
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CP016041.1
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NZ_CP039858.1
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NZ_CP031657.1
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NZ_AP017616.1
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NZ_CP135506.1
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NZ_CP135208.1
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NZ_CP059342.1
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NZ_CP133456.1
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NZ_CP058921.1
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NZ_CP107169.1
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NZ_CP132732.1
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NZ_CP107146.1
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NZ_CP124446.1
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NZ_CP121218.1
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NZ_CP124871.1
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NZ_CP124440.1
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NZ_CP124489.1
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NZ_CP124505.1
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NZ_CP124381.1
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CP125049.1
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NZ_CP124336.1
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NZ_OZ040210.1
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NZ_CP142948.1
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NZ_CP150010.1
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NZ_CP148322.1
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NZ_CP145643.1
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NZ_CP142923.1
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CP056360.1
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NZ_CP142962.1
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NZ_CP142942.1
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NZ_CP142936.1
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NZ_CP054234.1
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NZ_LR890413.1
See Comparison
NZ_CP049106.1
See Comparison
NZ_CP069985.1
See Comparison
CP054323.1
See Comparison
NZ_CP048336.1
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CP099117.1
See Comparison
NZ_CP065571.1
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NZ_AP022210.1
See Comparison
NZ_AP022101.1
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NZ_AP021967.1
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NZ_AP021949.1
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NZ_CP121089.1
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NZ_OP242284.1
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NZ_CP116163.1
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CP117208.1
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NZ_CP103630.1
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NZ_CP110992.1
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NZ_CP099758.1
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NZ_CP109881.1
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NZ_CP103473.1
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NZ_OW967982.1
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NZ_CP100538.1
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AP026523.1
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NZ_CP097369.1
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NZ_OW968131.1
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NZ_CP060870.1
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NZ_CP093233.1
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NZ_CP080063.1
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NZ_CP048613.1
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CP093117.1
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NZ_CP054167.1
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NZ_CP058884.1
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NZ_CP091713.1
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NZ_CP055172.1
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NZ_CP085072.1
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NZ_CP085078.1
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NZ_CP059132.1
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NZ_CP081886.1
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AP024699.1
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NZ_CP049855.1
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NZ_CP076321.1
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NZ_CP018996.1
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NZ_CP019024.1
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NZ_CP018972.1
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NZ_CP018942.1
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NZ_CP039858.1
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CP016041.1
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NZ_CP044963.1
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NZ_CP023855.1
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NZ_CP036207.1
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NZ_CP023833.1
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NZ_CP031657.1
See Comparison
NZ_AP017616.1
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NZ_CP135506.1
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NZ_CP135208.1
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NZ_CP133456.1
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NZ_CP058900.1
See Comparison
NZ_CP135711.1
See Comparison
NZ_CP132732.1
See Comparison
NZ_CP059342.1
See Comparison
NZ_CP058921.1
See Comparison
NZ_CP121218.1
See Comparison
NZ_CP107169.1
See Comparison
NZ_CP107146.1
See Comparison
NZ_CP124871.1
See Comparison
NZ_CP124489.1
See Comparison
CP125049.1
See Comparison
NZ_CP124446.1
See Comparison
NZ_CP124505.1
See Comparison
NZ_CP124440.1
See Comparison
NZ_CP150010.1
See Comparison
NZ_CP124381.1
See Comparison
NZ_CP124336.1
See Comparison
NZ_OZ040210.1
See Comparison
NZ_CP148322.1
See Comparison
NZ_CP145643.1
See Comparison
CP056360.1
See Comparison
NZ_CP142962.1
See Comparison
NZ_CP142942.1
See Comparison
NZ_CP142936.1
See Comparison
NZ_CP142948.1
See Comparison
NZ_CP142923.1
See Comparison
NZ_CP054234.1
See Comparison
NZ_LR890413.1
See Comparison
NZ_CP049106.1
See Comparison
NZ_CP069985.1
See Comparison
CP054323.1
See Comparison
NZ_CP048336.1
See Comparison
NZ_AP022210.1
See Comparison
NZ_CP065571.1
See Comparison
NZ_AP022101.1
See Comparison
NZ_AP021967.1
See Comparison
NZ_AP021949.1
See Comparison
CP099117.1
See Comparison
CP117208.1
See Comparison
NZ_CP121089.1
See Comparison
NZ_OP242284.1
See Comparison
NZ_CP110992.1
See Comparison
NZ_CP116163.1
See Comparison
NZ_CP099758.1
See Comparison
NZ_CP109881.1
See Comparison
AP026523.1
See Comparison
NZ_CP103630.1
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NZ_CP103473.1
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NZ_OW967982.1
See Comparison
NZ_CP100538.1
See Comparison
NZ_CP093233.1
See Comparison
NZ_OW968131.1
See Comparison
NZ_CP080063.1
See Comparison
NZ_CP097369.1
See Comparison
NZ_CP048613.1
See Comparison
NZ_CP055172.1
See Comparison
NZ_CP060870.1
See Comparison
CP093117.1
See Comparison
NZ_CP058884.1
See Comparison
NZ_CP091713.1
See Comparison
NZ_CP081886.1
See Comparison
NZ_CP085072.1
See Comparison
NZ_CP085078.1
See Comparison
NZ_CP054167.1
See Comparison
AP024699.1
See Comparison
NZ_CP049855.1
See Comparison
NZ_CP036207.1
See Comparison
NZ_CP059132.1
See Comparison
CP016041.1
See Comparison
NZ_CP044963.1
See Comparison
NZ_CP039858.1
See Comparison
NZ_CP076321.1
See Comparison
NZ_CP018996.1
See Comparison
NZ_CP019024.1
See Comparison
NZ_CP018972.1
See Comparison
NZ_CP018942.1
See Comparison
NZ_CP023855.1
See Comparison
NZ_CP023833.1
See Comparison
NZ_CP058900.1
See Comparison
NZ_CP135711.1
See Comparison
NZ_CP135506.1
See Comparison
NZ_CP031657.1
See Comparison
NZ_AP017616.1
See Comparison
NZ_CP135208.1
See Comparison
NZ_CP059342.1
See Comparison
NZ_CP058921.1
See Comparison
NZ_CP107169.1
See Comparison
NZ_CP133456.1
See Comparison
NZ_CP132732.1
See Comparison
NZ_CP107146.1
See Comparison
NZ_CP124446.1
See Comparison
NZ_CP121218.1
See Comparison
NZ_CP124505.1
See Comparison
NZ_CP124440.1
See Comparison
NZ_CP124489.1
See Comparison
NZ_CP124381.1
See Comparison
NZ_CP124336.1
See Comparison
CP125049.1
See Comparison
NZ_CP142962.1
See Comparison
NZ_OZ040210.1
See Comparison
NZ_CP150010.1
See Comparison
NZ_CP148322.1
See Comparison
NZ_CP145643.1
See Comparison
NZ_CP142948.1
See Comparison
NZ_CP142923.1
See Comparison
NZ_CP124871.1
See Comparison
NZ_CP142942.1
See Comparison
NZ_CP142936.1
See Comparison
CP056360.1
See Comparison
NZ_CP054234.1
See Comparison
NZ_AP022210.1
See Comparison
CP054323.1
See Comparison
NZ_CP048336.1
See Comparison
NZ_LR890413.1
See Comparison
NZ_CP065571.1
See Comparison
NZ_CP049106.1
See Comparison
NZ_CP069985.1
See Comparison
NZ_AP022101.1
See Comparison
NZ_AP021967.1
See Comparison
NZ_AP021949.1
See Comparison
NZ_CP121089.1
See Comparison
NZ_OP242284.1
See Comparison
CP099117.1
See Comparison
NZ_CP116163.1
See Comparison
CP117208.1
See Comparison
NZ_CP103630.1
See Comparison
NZ_CP110992.1
See Comparison
NZ_CP099758.1
See Comparison
NZ_CP109881.1
See Comparison
NZ_CP103473.1
See Comparison
NZ_CP097369.1
See Comparison
NZ_CP100538.1
See Comparison
AP026523.1
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NZ_OW967982.1
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NZ_CP048613.1
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NZ_OW968131.1
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NZ_CP080063.1
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NZ_CP060870.1
See Comparison
CP093117.1
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NZ_CP093233.1
See Comparison
NZ_CP085072.1
See Comparison
NZ_CP055172.1
See Comparison
NZ_CP054167.1
See Comparison
NZ_CP058884.1
See Comparison
NZ_CP091713.1
See Comparison
NZ_CP085078.1
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NZ_CP036207.1
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NZ_CP059132.1
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NZ_CP076321.1
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CP016041.1
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NZ_CP044963.1
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NZ_CP039858.1
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NZ_CP081886.1
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AP024699.1
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NZ_CP049855.1
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NZ_CP018996.1
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NZ_CP019024.1
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NZ_CP018972.1
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NZ_CP018942.1
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NZ_CP023855.1
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NZ_CP023833.1
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NZ_CP031657.1
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NZ_CP135208.1
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NZ_CP133456.1
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NZ_CP135711.1
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NZ_CP135506.1
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NZ_CP058900.1
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NZ_CP059342.1
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NZ_CP058921.1
See Comparison
NZ_CP132732.1
See Comparison
NZ_CP121218.1
See Comparison
NZ_CP107169.1
See Comparison
NZ_CP107146.1
See Comparison
CP125049.1
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NZ_CP124446.1
See Comparison
NZ_CP124505.1
See Comparison
NZ_CP124440.1
See Comparison
NZ_CP124489.1
See Comparison
NZ_CP124871.1
See Comparison
NZ_OZ040210.1
See Comparison
NZ_CP124381.1
See Comparison
NZ_CP124336.1
See Comparison
NZ_CP150010.1
See Comparison
NZ_CP148322.1
See Comparison
NZ_CP145643.1
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NZ_CP142948.1
See Comparison
NZ_CP142923.1
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CP054323.1
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NZ_CP142962.1
See Comparison
NZ_CP142942.1
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NZ_CP142936.1
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CP056360.1
See Comparison
NZ_CP054234.1
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NZ_CP048336.1
See Comparison
NZ_LR890413.1
See Comparison
NZ_CP049106.1
See Comparison
NZ_CP069985.1
See Comparison
NZ_AP022210.1
See Comparison
NZ_AP021967.1
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NZ_AP021949.1
See Comparison
NZ_CP065571.1
See Comparison
NZ_AP022101.1
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CP099117.1
See Comparison
CP117208.1
See Comparison
NZ_CP121089.1
See Comparison
NZ_OP242284.1
See Comparison
NZ_CP099758.1
See Comparison
NZ_CP116163.1
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NZ_CP110992.1
See Comparison
NZ_CP109881.1
See Comparison
AP026523.1
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NZ_CP103630.1
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NZ_CP103473.1
See Comparison
NZ_OW967982.1
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NZ_CP100538.1
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NZ_CP097369.1
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NZ_OW968131.1
See Comparison
NZ_CP093233.1
See Comparison
NZ_CP080063.1
See Comparison
NZ_CP048613.1
See Comparison
NZ_CP055172.1
See Comparison
NZ_CP060870.1
See Comparison
CP093117.1
See Comparison
NZ_CP058884.1
See Comparison
NZ_CP091713.1
See Comparison
NZ_CP054167.1
See Comparison
NZ_CP081886.1
See Comparison
NZ_CP085072.1
See Comparison
NZ_CP085078.1
See Comparison
AP024699.1
See Comparison
NZ_CP049855.1
See Comparison
NZ_CP036207.1
See Comparison
NZ_CP018996.1
See Comparison
NZ_CP019024.1
See Comparison
NZ_CP018972.1
See Comparison
NZ_CP018942.1
See Comparison
NZ_CP059132.1
See Comparison
NZ_CP076321.1
See Comparison
CP016041.1
See Comparison
NZ_CP044963.1
See Comparison
NZ_CP039858.1
See Comparison
NZ_CP023855.1
See Comparison
NZ_CP023833.1
See Comparison
NZ_CP031657.1
See Comparison
NZ_CP135711.1
See Comparison
NZ_AP017616.1
See Comparison
NZ_CP135208.1
See Comparison
NZ_CP135506.1
See Comparison
NZ_CP133456.1
See Comparison
NZ_CP059342.1
See Comparison
NZ_CP058921.1
See Comparison
NZ_CP058900.1
See Comparison
NZ_CP132732.1
See Comparison
NZ_CP124871.1
See Comparison
NZ_CP107169.1
See Comparison
NZ_CP107146.1
See Comparison
NZ_CP124446.1
See Comparison
NZ_CP124505.1
See Comparison
NZ_CP124440.1
See Comparison
NZ_CP124489.1
See Comparison
NZ_CP121218.1
See Comparison
CP125049.1
See Comparison
NZ_CP150010.1
See Comparison
NZ_CP124381.1
See Comparison
NZ_CP124336.1
See Comparison
NZ_OZ040210.1
See Comparison
NZ_CP148322.1
See Comparison
NZ_CP145643.1
See Comparison
NZ_CP142948.1
See Comparison
NZ_CP142923.1
See Comparison
CP056360.1
See Comparison
NZ_CP142962.1
See Comparison
NZ_CP142942.1
See Comparison
NZ_CP142936.1
See Comparison
NZ_CP069985.1
See Comparison
CP054323.1
See Comparison
NZ_CP054234.1
See Comparison
NZ_CP049106.1
See Comparison
NZ_CP048336.1
See Comparison
NZ_CP121089.1
See Comparison
NZ_LR890413.1
See Comparison
NZ_AP021967.1
See Comparison
NZ_AP021949.1
See Comparison
NZ_CP065571.1
See Comparison
NZ_AP022210.1
See Comparison
NZ_AP022101.1
See Comparison
CP099117.1
See Comparison
NZ_CP099758.1
See Comparison
CP117208.1
See Comparison
NZ_CP116163.1
See Comparison
NZ_CP109881.1
See Comparison
NZ_OP242284.1
See Comparison
NZ_CP110992.1
See Comparison
NZ_CP103630.1
See Comparison
NZ_CP103473.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore