Plasmid NZ_CP049855.1

Sequence

Nucleotide Information

Accession NZ_CP049855.1
Description Escherichia coli strain UPEC-774U/190308 plasmid pEcoUTI1b, complete sequence
Source refseq
Topology circular
Length 4072 bp
GC Content 0.51 %
Created at NCBI Aug. 5, 2021



Assembly

Genome Data Information

Accession GCF_019443685.1
Assembly Coverage 189.523


Biosample

Curated Collection Information
Accession 14277526

PLASMID INFORMATION
BIOSAMPLE_pathotype Escherichia coli, UPEC

GEOGRAPHICAL INFORMATION
Original Query Mexico,Mexico City
Original Query Type name
Coordinates (Lat/Lon) 19.43/-99.13
Address Mexico,Mexico City

ECOSYSTEM
Original Query Homo sapiens,Biopsy of human bladder epithelium,bladder epithelial biopsy from 50-year-old female patient with recurrent urinary tract infection
Classification bladder,disease,host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 50 years
Host-associated Sex female

DISEASE
Original Query Recurrent urinary tract infection,chronic disease,chronic disease,chronic disease
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP121218.1 See Comparison
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NZ_CP142948.1 See Comparison
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NZ_CP107146.1 See Comparison
NZ_CP121218.1 See Comparison
NZ_CP124381.1 See Comparison
NZ_OZ040210.1 See Comparison
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NZ_CP085072.1 See Comparison
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NZ_CP019024.1 See Comparison
NZ_CP018972.1 See Comparison
NZ_CP018942.1 See Comparison
NZ_CP107169.1 See Comparison
NZ_CP039858.1 See Comparison
NZ_CP036207.1 See Comparison
NZ_CP023855.1 See Comparison
NZ_CP023833.1 See Comparison
NZ_CP031657.1 See Comparison
NZ_AP017616.1 See Comparison
NZ_CP135208.1 See Comparison
NZ_CP133456.1 See Comparison
NZ_CP058900.1 See Comparison
NZ_CP059342.1 See Comparison
NZ_CP058921.1 See Comparison
NZ_CP132732.1 See Comparison
NZ_CP135506.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_CP107146.1 See Comparison
NZ_CP124446.1 See Comparison
NZ_CP121218.1 See Comparison
NZ_CP124505.1 See Comparison
NZ_CP124381.1 See Comparison
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NZ_CP055172.1 See Comparison
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NZ_CP059132.1 See Comparison
NZ_CP135506.1 See Comparison
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NZ_CP031657.1 See Comparison
NZ_AP017616.1 See Comparison
NZ_CP135208.1 See Comparison
NZ_CP121218.1 See Comparison
NZ_CP133456.1 See Comparison
NZ_CP058900.1 See Comparison
NZ_CP059342.1 See Comparison
NZ_CP058921.1 See Comparison
NZ_CP132732.1 See Comparison
NZ_CP107169.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_CP107146.1 See Comparison
NZ_CP142962.1 See Comparison
CP125049.1 See Comparison
NZ_OZ040210.1 See Comparison
NZ_CP150010.1 See Comparison
NZ_CP148322.1 See Comparison
NZ_CP142948.1 See Comparison
NZ_CP124446.1 See Comparison
NZ_CP124505.1 See Comparison
NZ_CP124381.1 See Comparison
NZ_CP142942.1 See Comparison
NZ_CP142936.1 See Comparison
NZ_CP049106.1 See Comparison
CP056360.1 See Comparison
NZ_CP054234.1 See Comparison
CP054323.1 See Comparison
NZ_CP069985.1 See Comparison
NZ_CP048336.1 See Comparison
NZ_LR890413.1 See Comparison
NZ_CP065571.1 See Comparison
NZ_CP109881.1 See Comparison
NZ_AP021967.1 See Comparison
NZ_AP021949.1 See Comparison
NZ_CP121089.1 See Comparison
CP117208.1 See Comparison
NZ_CP116163.1 See Comparison
NZ_CP099758.1 See Comparison
NZ_CP060870.1 See Comparison
NZ_CP103630.1 See Comparison
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NZ_CP097369.1 See Comparison
NZ_CP100538.1 See Comparison
NZ_CP080063.1 See Comparison
NZ_CP093233.1 See Comparison
NZ_CP091713.1 See Comparison
NZ_CP055172.1 See Comparison
NZ_CP059132.1 See Comparison
NZ_CP054167.1 See Comparison
NZ_CP085072.1 See Comparison
NZ_CP085078.1 See Comparison
AP024699.1 See Comparison
NZ_CP076321.1 See Comparison
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NZ_CP018942.1 See Comparison
NZ_CP036207.1 See Comparison
NZ_CP039858.1 See Comparison
NZ_CP107169.1 See Comparison
NZ_CP023855.1 See Comparison
NZ_CP023833.1 See Comparison
NZ_CP135506.1 See Comparison
NZ_CP135208.1 See Comparison
NZ_CP031657.1 See Comparison
NZ_AP017616.1 See Comparison
NZ_CP133456.1 See Comparison
NZ_CP058900.1 See Comparison
NZ_CP059342.1 See Comparison
NZ_CP058921.1 See Comparison
NZ_CP132732.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_CP107146.1 See Comparison
NZ_CP121218.1 See Comparison
NZ_OZ040210.1 See Comparison
NZ_CP124446.1 See Comparison
NZ_CP124505.1 See Comparison
CP125049.1 See Comparison
NZ_CP124381.1 See Comparison
NZ_CP150010.1 See Comparison
NZ_CP148322.1 See Comparison
NZ_CP142962.1 See Comparison
NZ_CP142948.1 See Comparison
NZ_CP142942.1 See Comparison
NZ_CP142936.1 See Comparison
NZ_CP054234.1 See Comparison
CP056360.1 See Comparison
NZ_CP049106.1 See Comparison
CP054323.1 See Comparison
NZ_CP048336.1 See Comparison
NZ_CP069985.1 See Comparison
NZ_AP021967.1 See Comparison
NZ_LR890413.1 See Comparison
NZ_CP065571.1 See Comparison
NZ_AP021949.1 See Comparison
NZ_CP121089.1 See Comparison
CP117208.1 See Comparison
NZ_CP103630.1 See Comparison
NZ_CP109881.1 See Comparison
NZ_CP116163.1 See Comparison
AP026523.1 See Comparison
NZ_CP099758.1 See Comparison
NZ_CP060870.1 See Comparison
NZ_CP097369.1 See Comparison
NZ_CP080063.1 See Comparison
NZ_CP093233.1 See Comparison
NZ_CP100538.1 See Comparison
NZ_CP091713.1 See Comparison
NZ_CP055172.1 See Comparison
NZ_CP018972.1 See Comparison
NZ_CP059132.1 See Comparison
NZ_CP076321.1 See Comparison
NZ_CP054167.1 See Comparison
NZ_CP085072.1 See Comparison
NZ_CP085078.1 See Comparison
AP024699.1 See Comparison
NZ_CP018942.1 See Comparison
CP016041.1 See Comparison
NZ_CP018996.1 See Comparison
NZ_CP019024.1 See Comparison
NZ_CP023855.1 See Comparison
NZ_CP036207.1 See Comparison
NZ_CP039858.1 See Comparison
NZ_CP023833.1 See Comparison
NZ_CP135506.1 See Comparison
NZ_AP017616.1 See Comparison
NZ_CP031657.1 See Comparison
NZ_CP135208.1 See Comparison
NZ_CP133456.1 See Comparison
NZ_CP058900.1 See Comparison
NZ_CP058921.1 See Comparison
NZ_CP059342.1 See Comparison
NZ_CP132732.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore