Plasmid NZ_CP085078.1

Sequence

Nucleotide Information

Accession NZ_CP085078.1
Description Escherichia coli strain P21_SE1_04.20 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 4071 bp
GC Content 0.51 %
Created at NCBI Oct. 25, 2021



Assembly

Genome Data Information

Accession GCF_020541025.1
Assembly Coverage 680


Biosample

Curated Collection Information
Accession 22252057

PLASMID INFORMATION
Genotype ST1702

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query Homo sapiens,pure culture,sputum
Classification cell_culture,host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP036207.1 See Comparison
NZ_CP135208.1 See Comparison
NZ_CP058900.1 See Comparison
NZ_CP058921.1 See Comparison
NZ_CP132732.1 See Comparison
NZ_CP107169.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_CP121218.1 See Comparison
NZ_CP124505.1 See Comparison
CP125049.1 See Comparison
NZ_OZ040210.1 See Comparison
NZ_CP148322.1 See Comparison
NZ_CP054234.1 See Comparison
CP054323.1 See Comparison
NZ_CP093233.1 See Comparison
NZ_LR890413.1 See Comparison
NZ_AP021967.1 See Comparison
NZ_CP080063.1 See Comparison
NZ_CP018972.1 See Comparison
NZ_CP060870.1 See Comparison
NZ_CP055172.1 See Comparison
NZ_CP049855.1 See Comparison
NZ_CP036207.1 See Comparison
CP016041.1 See Comparison
NZ_CP107169.1 See Comparison
NZ_CP135208.1 See Comparison
NZ_CP058900.1 See Comparison
NZ_CP058921.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_CP124505.1 See Comparison
NZ_CP132732.1 See Comparison
NZ_CP121218.1 See Comparison
NZ_CP093233.1 See Comparison
NZ_CP148322.1 See Comparison
NZ_AP021967.1 See Comparison
CP125049.1 See Comparison
NZ_OZ040210.1 See Comparison
NZ_CP054234.1 See Comparison
CP054323.1 See Comparison
NZ_LR890413.1 See Comparison
NZ_CP080063.1 See Comparison
NZ_CP055172.1 See Comparison
NZ_CP060870.1 See Comparison
NZ_CP049855.1 See Comparison
CP016041.1 See Comparison
NZ_CP018972.1 See Comparison
NZ_CP058900.1 See Comparison
NZ_CP036207.1 See Comparison
NZ_CP135208.1 See Comparison
NZ_CP058921.1 See Comparison
NZ_CP107169.1 See Comparison
NZ_CP132732.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_CP124505.1 See Comparison
NZ_CP121218.1 See Comparison
NZ_AP021967.1 See Comparison
CP125049.1 See Comparison
NZ_CP148322.1 See Comparison
NZ_CP054234.1 See Comparison
NZ_LR890413.1 See Comparison
NZ_OZ040210.1 See Comparison
CP054323.1 See Comparison
NZ_CP080063.1 See Comparison
NZ_CP060870.1 See Comparison
NZ_CP093233.1 See Comparison
NZ_CP055172.1 See Comparison
NZ_CP049855.1 See Comparison
CP016041.1 See Comparison
NZ_CP018972.1 See Comparison
NZ_CP058900.1 See Comparison
NZ_CP036207.1 See Comparison
NZ_CP135208.1 See Comparison
NZ_CP058921.1 See Comparison
NZ_CP132732.1 See Comparison
NZ_CP107169.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_CP124505.1 See Comparison
NZ_CP121218.1 See Comparison
NZ_OZ040210.1 See Comparison
CP125049.1 See Comparison
NZ_CP054234.1 See Comparison
NZ_CP148322.1 See Comparison
NZ_LR890413.1 See Comparison
CP054323.1 See Comparison
NZ_CP060870.1 See Comparison
NZ_CP080063.1 See Comparison
NZ_AP021967.1 See Comparison
NZ_CP093233.1 See Comparison
NZ_CP018972.1 See Comparison
NZ_CP055172.1 See Comparison
NZ_CP049855.1 See Comparison
NZ_CP058921.1 See Comparison
CP016041.1 See Comparison
NZ_CP036207.1 See Comparison
NZ_CP135208.1 See Comparison
NZ_CP107169.1 See Comparison
NZ_CP058900.1 See Comparison
NZ_CP132732.1 See Comparison
NZ_CP107177.1 See Comparison
CP125049.1 See Comparison
NZ_CP121218.1 See Comparison
NZ_CP124505.1 See Comparison
NZ_LR890413.1 See Comparison
NZ_OZ040210.1 See Comparison
NZ_CP148322.1 See Comparison
NZ_CP054234.1 See Comparison
CP054323.1 See Comparison
NZ_CP080063.1 See Comparison
NZ_AP021967.1 See Comparison
NZ_CP060870.1 See Comparison
NZ_CP093233.1 See Comparison
NZ_CP018972.1 See Comparison
NZ_CP085078.1 See Comparison
NZ_CP049855.1 See Comparison
NZ_CP055172.1 See Comparison
NZ_CP121218.1 See Comparison
NZ_CP135208.1 See Comparison
NZ_CP058900.1 See Comparison
NZ_CP058921.1 See Comparison
NZ_CP132732.1 See Comparison
CP016041.1 See Comparison
NZ_CP036207.1 See Comparison
NZ_CP107169.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_CP124505.1 See Comparison
NZ_CP054234.1 See Comparison
CP125049.1 See Comparison
NZ_OZ040210.1 See Comparison
NZ_CP148322.1 See Comparison
NZ_CP055172.1 See Comparison
CP054323.1 See Comparison
NZ_LR890413.1 See Comparison
NZ_CP080063.1 See Comparison
NZ_CP093233.1 See Comparison
NZ_CP060870.1 See Comparison
NZ_AP021967.1 See Comparison
NZ_CP018972.1 See Comparison
NZ_CP049855.1 See Comparison
CP016041.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore