Plasmid NZ_CP058900.1

Sequence

Nucleotide Information

Accession	NZ_CP058900.1
Description	Escherichia coli strain MS10858 plasmid pMS10858C, complete sequence
Source	refseq
Topology	circular
Length	4072 bp
GC Content	0.51 %
Created at NCBI	Sept. 3, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_030988725.1
Assembly Coverage	276

Biosample

Curated Collection Information

Accession	10141460

PLASMID INFORMATION

BIOSAMPLE_pathotype	UPEC

GEOGRAPHICAL INFORMATION

Original Query	Australia,Queensland
Original Query Type	name
Coordinates (Lat/Lon)	-21.92/144.46
Address	Australia,Queensland

ECOSYSTEM

Original Query	Homo sapiens,urine
Classification	host_associated,urinary_system
Host-associated Taxon	Homo sapiens (9606)
Host-associated Age	77
Host-associated Sex	female

DISEASE

Original Query	urinary tract infection
DOID/SYMP	Urinary tract infection (DOID:0080784 ) An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_OW968131.1	See Comparison
NZ_CP097369.1	See Comparison
NZ_CP080063.1	See Comparison
NZ_CP093233.1	See Comparison
NZ_CP060870.1	See Comparison
NZ_CP091713.1	See Comparison
NZ_CP055172.1	See Comparison
NZ_CP054167.1	See Comparison
NZ_CP085072.1	See Comparison
NZ_CP085078.1	See Comparison
AP024699.1	See Comparison
NZ_CP049855.1	See Comparison
NZ_CP059132.1	See Comparison
NZ_CP076321.1	See Comparison
NZ_CP018996.1	See Comparison
NZ_CP019024.1	See Comparison
NZ_CP018972.1	See Comparison
NZ_CP018942.1	See Comparison
CP016041.1	See Comparison
NZ_CP044963.1	See Comparison
NZ_CP036207.1	See Comparison
NZ_CP039858.1	See Comparison
NZ_CP023855.1	See Comparison
NZ_CP023833.1	See Comparison
NZ_CP031657.1	See Comparison
NZ_AP017616.1	See Comparison
NZ_CP135506.1	See Comparison
NZ_CP135208.1	See Comparison
NZ_CP124446.1	See Comparison
NZ_CP133456.1	See Comparison
NZ_CP058900.1	See Comparison
NZ_CP132732.1	See Comparison
NZ_CP121218.1	See Comparison
NZ_CP059342.1	See Comparison
NZ_CP058921.1	See Comparison
NZ_CP107169.1	See Comparison
NZ_CP107177.1	See Comparison
NZ_CP107146.1	See Comparison
NZ_CP124505.1	See Comparison
NZ_CP124381.1	See Comparison
CP125049.1	See Comparison
NZ_OZ040210.1	See Comparison
NZ_CP150010.1	See Comparison
NZ_CP148322.1	See Comparison
NZ_CP145643.1	See Comparison
NZ_CP142948.1	See Comparison
NZ_CP142962.1	See Comparison
NZ_CP049106.1	See Comparison
NZ_CP142942.1	See Comparison
NZ_CP142936.1	See Comparison
CP056360.1	See Comparison
NZ_CP054234.1	See Comparison
CP054323.1	See Comparison
NZ_LR890413.1	See Comparison
NZ_CP048336.1	See Comparison
NZ_CP069985.1	See Comparison
NZ_CP065571.1	See Comparison
NZ_CP116163.1	See Comparison
NZ_AP021967.1	See Comparison
NZ_AP021949.1	See Comparison
CP099117.1	See Comparison
NZ_CP121089.1	See Comparison
CP117208.1	See Comparison
NZ_CP103630.1	See Comparison
NZ_CP110992.1	See Comparison
NZ_CP109881.1	See Comparison
NZ_CP099758.1	See Comparison
NZ_CP097369.1	See Comparison
AP026523.1	See Comparison
NZ_OW968131.1	See Comparison
NZ_CP100538.1	See Comparison
NZ_CP093233.1	See Comparison
NZ_CP080063.1	See Comparison
NZ_CP060870.1	See Comparison
NZ_CP091713.1	See Comparison
NZ_CP085072.1	See Comparison
NZ_CP054167.1	See Comparison
NZ_CP055172.1	See Comparison
NZ_CP085078.1	See Comparison
NZ_CP049855.1	See Comparison
AP024699.1	See Comparison
NZ_AP017616.1	See Comparison
NZ_CP059132.1	See Comparison
NZ_CP076321.1	See Comparison
CP016041.1	See Comparison
NZ_CP044963.1	See Comparison
NZ_CP039858.1	See Comparison
NZ_CP023855.1	See Comparison
NZ_CP023833.1	See Comparison
NZ_CP031657.1	See Comparison
NZ_CP018996.1	See Comparison
NZ_CP019024.1	See Comparison
NZ_CP018972.1	See Comparison
NZ_CP018942.1	See Comparison
NZ_CP036207.1	See Comparison
NZ_CP135208.1	See Comparison
NZ_CP133456.1	See Comparison
NZ_CP135506.1	See Comparison
NZ_CP059342.1	See Comparison
NZ_CP058921.1	See Comparison
NZ_CP132732.1	See Comparison
CP125049.1	See Comparison
NZ_CP121218.1	See Comparison
NZ_CP107169.1	See Comparison
NZ_CP107177.1	See Comparison
NZ_CP107146.1	See Comparison
NZ_CP124446.1	See Comparison
NZ_CP124505.1	See Comparison
NZ_CP124381.1	See Comparison
NZ_CP148322.1	See Comparison
NZ_OZ040210.1	See Comparison
NZ_CP150010.1	See Comparison
NZ_CP145643.1	See Comparison
NZ_CP142948.1	See Comparison
NZ_CP054234.1	See Comparison
NZ_CP142962.1	See Comparison
NZ_CP142942.1	See Comparison
NZ_CP142936.1	See Comparison
CP056360.1	See Comparison
NZ_AP021967.1	See Comparison
CP054323.1	See Comparison
NZ_LR890413.1	See Comparison
NZ_CP065571.1	See Comparison
NZ_CP049106.1	See Comparison
NZ_CP048336.1	See Comparison
NZ_CP069985.1	See Comparison
NZ_AP021949.1	See Comparison
NZ_CP100538.1	See Comparison
CP099117.1	See Comparison
NZ_CP121089.1	See Comparison
CP117208.1	See Comparison
NZ_CP116163.1	See Comparison
NZ_CP109881.1	See Comparison
NZ_CP099758.1	See Comparison
NZ_CP110992.1	See Comparison
NZ_CP103630.1	See Comparison
AP026523.1	See Comparison
NZ_CP080063.1	See Comparison
NZ_CP097369.1	See Comparison
NZ_OW968131.1	See Comparison
NZ_CP060870.1	See Comparison
NZ_CP093233.1	See Comparison
NZ_CP085072.1	See Comparison
NZ_CP091713.1	See Comparison
NZ_CP055172.1	See Comparison
NZ_CP054167.1	See Comparison
NZ_CP085078.1	See Comparison
NZ_CP059132.1	See Comparison
NZ_CP049855.1	See Comparison
AP024699.1	See Comparison
NZ_CP018996.1	See Comparison
NZ_CP076321.1	See Comparison
NZ_CP019024.1	See Comparison
NZ_CP018972.1	See Comparison
NZ_CP018942.1	See Comparison
NZ_CP023855.1	See Comparison
CP016041.1	See Comparison
NZ_CP044963.1	See Comparison
NZ_CP039858.1	See Comparison
NZ_CP036207.1	See Comparison
NZ_CP023833.1	See Comparison
NZ_CP132732.1	See Comparison
NZ_CP031657.1	See Comparison
NZ_AP017616.1	See Comparison
NZ_CP133456.1	See Comparison
NZ_CP059342.1	See Comparison
NZ_CP058921.1	See Comparison
NZ_CP135506.1	See Comparison
NZ_CP135208.1	See Comparison
NZ_CP124446.1	See Comparison
NZ_CP121218.1	See Comparison
NZ_CP107169.1	See Comparison
NZ_CP107177.1	See Comparison
NZ_CP107146.1	See Comparison
NZ_CP124505.1	See Comparison
NZ_CP124381.1	See Comparison
NZ_CP049106.1	See Comparison
CP125049.1	See Comparison
NZ_OZ040210.1	See Comparison
NZ_CP150010.1	See Comparison
NZ_CP148322.1	See Comparison
NZ_CP145643.1	See Comparison
NZ_CP142948.1	See Comparison
NZ_CP142962.1	See Comparison
NZ_CP142942.1	See Comparison
NZ_CP142936.1	See Comparison
CP056360.1	See Comparison
NZ_CP054234.1	See Comparison
CP054323.1	See Comparison
NZ_CP048336.1	See Comparison
NZ_CP069985.1	See Comparison
NZ_CP100538.1	See Comparison
NZ_LR890413.1	See Comparison
NZ_CP065571.1	See Comparison
NZ_CP110992.1	See Comparison
NZ_CP109881.1	See Comparison
NZ_CP099758.1	See Comparison
NZ_AP021967.1	See Comparison
NZ_AP021949.1	See Comparison
CP099117.1	See Comparison
NZ_CP121089.1	See Comparison
CP117208.1	See Comparison
NZ_CP116163.1	See Comparison
NZ_CP103630.1	See Comparison
AP026523.1	See Comparison
NZ_CP080063.1	See Comparison
NZ_CP097369.1	See Comparison
NZ_OW968131.1	See Comparison
NZ_CP060870.1	See Comparison
NZ_CP055172.1	See Comparison
NZ_CP093233.1	See Comparison
NZ_CP091713.1	See Comparison
NZ_CP054167.1	See Comparison
NZ_CP049855.1	See Comparison
AP024699.1	See Comparison
NZ_CP085072.1	See Comparison
NZ_CP085078.1	See Comparison
CP016041.1	See Comparison
NZ_CP059132.1	See Comparison
NZ_CP076321.1	See Comparison
NZ_CP018996.1	See Comparison
NZ_CP019024.1	See Comparison
NZ_CP018972.1	See Comparison
NZ_CP018942.1	See Comparison
NZ_CP044963.1	See Comparison
NZ_CP121218.1	See Comparison
NZ_CP135506.1	See Comparison
NZ_CP135208.1	See Comparison
NZ_CP107169.1	See Comparison
NZ_CP107177.1	See Comparison
NZ_CP107146.1	See Comparison
NZ_CP039858.1	See Comparison
NZ_CP036207.1	See Comparison
NZ_CP023855.1	See Comparison
NZ_CP023833.1	See Comparison
NZ_CP031657.1	See Comparison
NZ_AP017616.1	See Comparison
NZ_CP133456.1	See Comparison
NZ_CP059342.1	See Comparison
NZ_CP058921.1	See Comparison
NZ_CP132732.1	See Comparison
NZ_CP048336.1	See Comparison
NZ_CP124446.1	See Comparison
NZ_CP124505.1	See Comparison
NZ_CP124381.1	See Comparison
NZ_CP142962.1	See Comparison
NZ_CP142942.1	See Comparison
NZ_CP142936.1	See Comparison
CP125049.1	See Comparison
NZ_OZ040210.1	See Comparison
NZ_CP150010.1	See Comparison
NZ_CP148322.1	See Comparison
NZ_CP145643.1	See Comparison
NZ_CP142948.1	See Comparison
CP056360.1	See Comparison
NZ_CP054234.1	See Comparison
CP054323.1	See Comparison
NZ_CP069985.1	See Comparison
NZ_CP049106.1	See Comparison
NZ_CP110992.1	See Comparison
NZ_AP021967.1	See Comparison
NZ_AP021949.1	See Comparison
CP099117.1	See Comparison
NZ_CP121089.1	See Comparison
CP117208.1	See Comparison
NZ_CP116163.1	See Comparison
NZ_LR890413.1	See Comparison
NZ_CP065571.1	See Comparison
NZ_CP109881.1	See Comparison
NZ_CP099758.1	See Comparison
AP026523.1	See Comparison
NZ_CP103630.1	See Comparison
NZ_OW968131.1	See Comparison
NZ_CP100538.1	See Comparison
NZ_CP093233.1	See Comparison
NZ_CP080063.1	See Comparison
NZ_CP097369.1	See Comparison
NZ_CP091713.1	See Comparison
NZ_CP060870.1	See Comparison
AP024699.1	See Comparison
NZ_CP085072.1	See Comparison
NZ_CP085078.1	See Comparison
NZ_CP055172.1	See Comparison
NZ_CP054167.1	See Comparison
CP016041.1	See Comparison
NZ_CP049855.1	See Comparison
NZ_CP018996.1	See Comparison
NZ_CP019024.1	See Comparison
NZ_CP018972.1	See Comparison
NZ_CP018942.1	See Comparison
NZ_CP059132.1	See Comparison
NZ_CP076321.1	See Comparison
NZ_CP036207.1	See Comparison
NZ_CP044963.1	See Comparison
NZ_CP039858.1	See Comparison
NZ_CP135506.1	See Comparison
NZ_CP023855.1	See Comparison
NZ_CP023833.1	See Comparison
NZ_CP031657.1	See Comparison
NZ_AP017616.1	See Comparison
NZ_CP135208.1	See Comparison
NZ_CP121218.1	See Comparison
NZ_CP133456.1	See Comparison
NZ_CP059342.1	See Comparison
NZ_CP058921.1	See Comparison
NZ_CP132732.1	See Comparison
NZ_CP107169.1	See Comparison
NZ_CP107177.1	See Comparison
NZ_CP107146.1	See Comparison
NZ_CP148322.1	See Comparison
NZ_CP124446.1	See Comparison
NZ_CP124505.1	See Comparison
CP125049.1	See Comparison
NZ_CP124381.1	See Comparison
NZ_OZ040210.1	See Comparison
NZ_CP150010.1	See Comparison
NZ_CP145643.1	See Comparison
NZ_CP049106.1	See Comparison
NZ_CP142948.1	See Comparison
CP056360.1	See Comparison
NZ_CP054234.1	See Comparison
CP054323.1	See Comparison
NZ_CP142962.1	See Comparison
NZ_CP142942.1	See Comparison
NZ_CP142936.1	See Comparison
NZ_CP069985.1	See Comparison
NZ_CP048336.1	See Comparison
NZ_AP021967.1	See Comparison
NZ_LR890413.1	See Comparison
NZ_CP065571.1	See Comparison
NZ_AP021949.1	See Comparison
CP099117.1	See Comparison
NZ_CP121089.1	See Comparison
CP117208.1	See Comparison
NZ_CP116163.1	See Comparison
NZ_CP103630.1	See Comparison
NZ_CP110992.1	See Comparison
NZ_CP109881.1	See Comparison
NZ_CP099758.1	See Comparison
NZ_CP097369.1	See Comparison
AP026523.1	See Comparison
NZ_OW968131.1	See Comparison
NZ_CP100538.1	See Comparison
NZ_CP080063.1	See Comparison
NZ_CP085072.1	See Comparison
NZ_CP060870.1	See Comparison
NZ_CP055172.1	See Comparison
NZ_CP054167.1	See Comparison
NZ_CP093233.1	See Comparison
NZ_CP091713.1	See Comparison
NZ_CP085078.1	See Comparison
NZ_CP059132.1	See Comparison
AP024699.1	See Comparison
NZ_CP049855.1	See Comparison
NZ_CP076321.1	See Comparison
NZ_CP018996.1	See Comparison
NZ_CP018972.1	See Comparison
NZ_CP018942.1	See Comparison
NZ_CP019024.1	See Comparison
NZ_CP135506.1	See Comparison
NZ_CP036207.1	See Comparison
CP016041.1	See Comparison
NZ_CP044963.1	See Comparison
NZ_CP039858.1	See Comparison
NZ_CP023855.1	See Comparison
NZ_CP023833.1	See Comparison
NZ_CP031657.1	See Comparison
NZ_AP017616.1	See Comparison
NZ_CP135208.1	See Comparison
NZ_CP132732.1	See Comparison
NZ_CP133456.1	See Comparison
NZ_CP059342.1	See Comparison
NZ_CP058921.1	See Comparison
NZ_CP107169.1	See Comparison
NZ_CP121218.1	See Comparison
NZ_CP107177.1	See Comparison
NZ_CP107146.1	See Comparison
NZ_CP148322.1	See Comparison
NZ_CP124505.1	See Comparison
NZ_CP150010.1	See Comparison
NZ_CP124446.1	See Comparison
CP125049.1	See Comparison
NZ_CP124381.1	See Comparison
NZ_OZ040210.1	See Comparison
NZ_CP145643.1	See Comparison
NZ_CP048336.1	See Comparison
NZ_CP142962.1	See Comparison
NZ_CP142942.1	See Comparison
NZ_CP142936.1	See Comparison
NZ_CP142948.1	See Comparison
CP056360.1	See Comparison
NZ_CP054234.1	See Comparison
CP054323.1	See Comparison
CP117208.1	See Comparison
NZ_LR890413.1	See Comparison
CP099117.1	See Comparison
NZ_CP049106.1	See Comparison
NZ_CP069985.1	See Comparison
NZ_CP065571.1	See Comparison
NZ_AP021967.1	See Comparison
NZ_AP021949.1	See Comparison
NZ_CP121089.1	See Comparison
NZ_CP110992.1	See Comparison
NZ_CP116163.1	See Comparison
AP026523.1	See Comparison
NZ_CP109881.1	See Comparison
NZ_CP099758.1	See Comparison
NZ_CP103630.1	See Comparison
NZ_CP100538.1	See Comparison

Identical Plasmids

100% Sequence Identity

NZ_CP058921.1

Sequence

Accession: NZ_CP058921.1
Description: Escherichia coli strain MS8324 plasmid pMS8324D, complete sequence
Source: refseq
Created at NCBI: Sept. 3, 2023

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 10141490

GEOGRAPHICAL INFORMATION

Original Query: Australia,Western Australia
Original Query Type: name
Address: Australia,Western Australia
Coordinates (Lat/Lon): -25.23/121.02

ECOSYSTEM

Original Query: Homo sapiens,urine
Classification: host_associated,urinary_system
Host-associated Taxon:
- Homo sapiens (9606)

DISEASE

Original Query: urinary tract infection
DOID/SYMP:
- Urinary tract infection (DOID:0080784 )

Visualization

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore