Plasmid NZ_CP124871.1

Sequence

Nucleotide Information

Accession NZ_CP124871.1
Description Klebsiella quasipneumoniae strain M7 plasmid pM7e, complete sequence
Source refseq
Topology circular
Length 4063 bp
GC Content 0.51 %
Created at NCBI May 17, 2023



Assembly

Genome Data Information

Accession GCF_030020875.1
Assembly Coverage 150


Biosample

Curated Collection Information
Accession 34510250

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 1.2941N;103.7830E
Original Query Type coordinates
Coordinates (Lat/Lon) 1.29/103.78
Address National University Hospital, Lower Kent Ridge Road, Queenstown, Southwest, Singapore, 119082, Singapore

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacterial infection
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP142936.1 See Comparison
CP056360.1 See Comparison
NZ_AP022101.1 See Comparison
NZ_AP021949.1 See Comparison
NZ_CP103473.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_CP054167.1 See Comparison
NZ_CP018972.1 See Comparison
NZ_CP093233.1 See Comparison
NZ_CP055172.1 See Comparison
NZ_CP132732.1 See Comparison
NZ_CP093233.1 See Comparison
CP125049.1 See Comparison
NZ_CP142936.1 See Comparison
CP056360.1 See Comparison
NZ_AP022101.1 See Comparison
NZ_AP021949.1 See Comparison
NZ_CP103473.1 See Comparison
CP056360.1 See Comparison
NZ_CP055172.1 See Comparison
NZ_CP054167.1 See Comparison
CP125049.1 See Comparison
NZ_CP142936.1 See Comparison
NZ_CP018972.1 See Comparison
NZ_CP132732.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_AP022101.1 See Comparison
NZ_AP021949.1 See Comparison
NZ_CP103473.1 See Comparison
NZ_CP055172.1 See Comparison
NZ_CP093233.1 See Comparison
NZ_CP054167.1 See Comparison
NZ_CP018972.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_CP132732.1 See Comparison
CP125049.1 See Comparison
NZ_CP124871.1 See Comparison
NZ_CP103473.1 See Comparison
NZ_CP142936.1 See Comparison
CP056360.1 See Comparison
NZ_AP022101.1 See Comparison
NZ_AP021949.1 See Comparison
NZ_CP132732.1 See Comparison
NZ_CP055172.1 See Comparison
NZ_CP054167.1 See Comparison
NZ_CP018972.1 See Comparison
NZ_CP093233.1 See Comparison
NZ_CP054167.1 See Comparison
NZ_AP022101.1 See Comparison
NZ_AP021949.1 See Comparison
NZ_CP093233.1 See Comparison
NZ_CP055172.1 See Comparison
NZ_CP107177.1 See Comparison
CP125049.1 See Comparison
NZ_CP142936.1 See Comparison
CP056360.1 See Comparison
NZ_CP103473.1 See Comparison
NZ_CP132732.1 See Comparison
NZ_CP018972.1 See Comparison
NZ_CP103473.1 See Comparison
CP125049.1 See Comparison
NZ_CP142936.1 See Comparison
CP056360.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_AP022101.1 See Comparison
NZ_AP021949.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_CP093233.1 See Comparison
NZ_CP054167.1 See Comparison
NZ_CP132732.1 See Comparison
NZ_CP055172.1 See Comparison
NZ_CP018972.1 See Comparison
CP125049.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore