Plasmid NZ_CP109881.1

Sequence

Nucleotide Information

Accession NZ_CP109881.1
Description Escherichia coli strain EC488 plasmid pEC488-7, complete sequence
Source refseq
Topology circular
Length 4063 bp
GC Content 0.52 %
Created at NCBI Nov. 2, 2022



Assembly

Genome Data Information

Accession GCF_025946585.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 30088785

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 27N;110E
Original Query Type coordinates
Coordinates (Lat/Lon) 27.00/110.00
Address Gaoyi, Huitong County, Huaihua, Hunan, China

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Tuberculosis
DOID/SYMP
  • Tuberculosis (DOID:399 )
    • A primary bacterial infectious disease that is located_in lungs, located_in lymph nodes, located_in pericardium, located_in brain, located_in pleura or located_in gastrointestinal tract, has_material_basis_in Mycobacterium tuberculosis, which is transmitted_by droplets released into the air when an infected person coughs or sneezes.
    • Has_material_basis_in: ['mycobacterium tuberculosis']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP132732.1 See Comparison
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NZ_CP107146.1 See Comparison
NZ_CP150010.1 See Comparison
CP125049.1 See Comparison
NZ_CP124446.1 See Comparison
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NZ_CP124489.1 See Comparison
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NZ_CP124336.1 See Comparison
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NZ_CP049106.1 See Comparison
NZ_CP048336.1 See Comparison
NZ_CP069985.1 See Comparison
NZ_AP021949.1 See Comparison
CP099117.1 See Comparison
NZ_CP121089.1 See Comparison
CP117208.1 See Comparison
NZ_CP116163.1 See Comparison
NZ_CP110992.1 See Comparison
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NZ_CP049855.1 See Comparison
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NZ_CP055172.1 See Comparison
NZ_CP054167.1 See Comparison
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NZ_CP018972.1 See Comparison
NZ_CP018942.1 See Comparison
NZ_CP036207.1 See Comparison
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NZ_CP023833.1 See Comparison
NZ_CP031657.1 See Comparison
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NZ_CP058900.1 See Comparison
NZ_CP059342.1 See Comparison
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NZ_CP132732.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_CP107146.1 See Comparison
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NZ_CP124440.1 See Comparison
NZ_CP124489.1 See Comparison
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NZ_CP091713.1 See Comparison
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NZ_CP054167.1 See Comparison
NZ_CP049855.1 See Comparison
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NZ_CP018942.1 See Comparison
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NZ_CP058921.1 See Comparison
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NZ_CP107177.1 See Comparison
NZ_CP107146.1 See Comparison
NZ_CP124446.1 See Comparison
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CP125049.1 See Comparison
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NZ_CP048336.1 See Comparison
NZ_CP142948.1 See Comparison
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NZ_CP142942.1 See Comparison
NZ_CP142936.1 See Comparison
NZ_CP049106.1 See Comparison
NZ_LR890413.1 See Comparison
NZ_CP069985.1 See Comparison
NZ_CP065571.1 See Comparison
NZ_CP110992.1 See Comparison
NZ_AP021967.1 See Comparison
NZ_AP021949.1 See Comparison
CP099117.1 See Comparison
NZ_CP121089.1 See Comparison
CP117208.1 See Comparison
NZ_CP116163.1 See Comparison
NZ_CP099758.1 See Comparison
AP026523.1 See Comparison
NZ_CP097369.1 See Comparison
NZ_OW967982.1 See Comparison
NZ_OW968131.1 See Comparison
NZ_CP080063.1 See Comparison
NZ_CP048613.1 See Comparison
NZ_CP093233.1 See Comparison
NZ_CP059132.1 See Comparison
NZ_CP085072.1 See Comparison
NZ_CP058884.1 See Comparison
NZ_CP091713.1 See Comparison
NZ_CP055172.1 See Comparison
NZ_CP054167.1 See Comparison
AP024699.1 See Comparison
NZ_CP049855.1 See Comparison
NZ_CP076321.1 See Comparison
NZ_CP019024.1 See Comparison
NZ_CP018972.1 See Comparison
NZ_CP018996.1 See Comparison
NZ_CP018942.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore