Plasmid CP016041.1

Sequence

Nucleotide Information

Accession CP016041.1
Description Escherichia coli isolate Co6114 plasmid pC06114_7, complete sequence
Source insd
Topology circular
Length 4071 bp
GC Content 0.51 %
Created at NCBI June 20, 2016



Biosample

Curated Collection Information
Accession 4963292

PLASMID INFORMATION
BIOSAMPLE_beta_lactamase_family OXA
BIOSAMPLE_carbapenemase yes

GEOGRAPHICAL INFORMATION
Original Query Germany,Hamburg
Original Query Type name
Coordinates (Lat/Lon) 53.55/10.00
Address Germany,Hamburg

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_AP021967.1 See Comparison
NZ_CP060870.1 See Comparison
NZ_CP124505.1 See Comparison
NZ_CP085078.1 See Comparison
NZ_CP036207.1 See Comparison
NZ_CP107169.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_CP049855.1 See Comparison
NZ_CP058900.1 See Comparison
NZ_CP058921.1 See Comparison
NZ_CP121218.1 See Comparison
NZ_OZ040210.1 See Comparison
NZ_LR890413.1 See Comparison
NZ_CP054234.1 See Comparison
NZ_CP085078.1 See Comparison
NZ_AP021967.1 See Comparison
NZ_CP060870.1 See Comparison
NZ_CP058900.1 See Comparison
NZ_CP049855.1 See Comparison
NZ_CP036207.1 See Comparison
CP016041.1 See Comparison
NZ_CP058921.1 See Comparison
NZ_LR890413.1 See Comparison
NZ_CP121218.1 See Comparison
NZ_CP107169.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_CP124505.1 See Comparison
NZ_OZ040210.1 See Comparison
NZ_CP054234.1 See Comparison
NZ_AP021967.1 See Comparison
NZ_CP060870.1 See Comparison
NZ_CP085078.1 See Comparison
NZ_CP121218.1 See Comparison
NZ_CP058900.1 See Comparison
NZ_CP058921.1 See Comparison
NZ_CP107169.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_CP049855.1 See Comparison
NZ_CP036207.1 See Comparison
NZ_LR890413.1 See Comparison
NZ_CP054234.1 See Comparison
NZ_CP124505.1 See Comparison
NZ_OZ040210.1 See Comparison
NZ_CP060870.1 See Comparison
NZ_AP021967.1 See Comparison
NZ_CP049855.1 See Comparison
NZ_CP085078.1 See Comparison
NZ_CP121218.1 See Comparison
NZ_CP036207.1 See Comparison
NZ_CP058900.1 See Comparison
NZ_CP058921.1 See Comparison
NZ_CP107169.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_OZ040210.1 See Comparison
NZ_CP124505.1 See Comparison
NZ_CP060870.1 See Comparison
NZ_CP054234.1 See Comparison
NZ_LR890413.1 See Comparison
NZ_AP021967.1 See Comparison
NZ_CP049855.1 See Comparison
NZ_CP085078.1 See Comparison
NZ_CP058900.1 See Comparison
NZ_CP058921.1 See Comparison
NZ_CP036207.1 See Comparison
NZ_CP124505.1 See Comparison
NZ_CP107169.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_CP121218.1 See Comparison
NZ_AP021967.1 See Comparison
NZ_OZ040210.1 See Comparison
NZ_CP054234.1 See Comparison
NZ_LR890413.1 See Comparison
NZ_CP085078.1 See Comparison
NZ_CP060870.1 See Comparison
NZ_CP058900.1 See Comparison
NZ_CP049855.1 See Comparison
NZ_CP036207.1 See Comparison
NZ_CP121218.1 See Comparison
NZ_CP058921.1 See Comparison
NZ_CP107169.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_OZ040210.1 See Comparison
NZ_CP124505.1 See Comparison
NZ_CP054234.1 See Comparison
NZ_LR890413.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore