Plasmid NZ_AP017616.1

Sequence

Nucleotide Information

Accession NZ_AP017616.1
Description Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_6, complete sequence
Source refseq
Topology circular
Length 4073 bp
GC Content 0.51 %
Created at NCBI Sept. 27, 2017



Assembly

Genome Data Information

Accession GCF_002357915.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 6693586

PLASMID INFORMATION
BIOSAMPLE_rel_to_oxygen aerobic

GEOGRAPHICAL INFORMATION
Original Query Japan
Original Query Type name
Coordinates (Lat/Lon) 36.57/139.24
Address Japan

ECOSYSTEM
Original Query Sus scrofa
Classification host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP124446.1 See Comparison
NZ_CP124440.1 See Comparison
NZ_CP124489.1 See Comparison
NZ_CP124381.1 See Comparison
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NZ_CP150010.1 See Comparison
NZ_CP148322.1 See Comparison
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NZ_CP142948.1 See Comparison
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CP054323.1 See Comparison
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NZ_CP065571.1 See Comparison
NZ_CP049106.1 See Comparison
NZ_CP048336.1 See Comparison
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NZ_AP021949.1 See Comparison
CP099117.1 See Comparison
CP117208.1 See Comparison
NZ_CP121089.1 See Comparison
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NZ_CP116163.1 See Comparison
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CP054323.1 See Comparison
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NZ_CP069985.1 See Comparison
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NZ_CP065571.1 See Comparison
CP099117.1 See Comparison
NZ_CP121089.1 See Comparison
NZ_AP022210.1 See Comparison
NZ_AP021967.1 See Comparison
NZ_AP021949.1 See Comparison
CP117208.1 See Comparison
NZ_OP242284.1 See Comparison
NZ_CP116163.1 See Comparison
NZ_CP109881.1 See Comparison
NZ_CP099758.1 See Comparison
NZ_CP100538.1 See Comparison
NZ_CP103630.1 See Comparison
AP026523.1 See Comparison
NZ_CP103473.1 See Comparison
NZ_OW968131.1 See Comparison
NZ_OW967982.1 See Comparison
NZ_CP080063.1 See Comparison
NZ_CP097369.1 See Comparison
NZ_CP048613.1 See Comparison
NZ_CP085072.1 See Comparison
NZ_CP093233.1 See Comparison
NZ_CP058884.1 See Comparison
NZ_CP091713.1 See Comparison
NZ_CP055172.1 See Comparison
NZ_CP054167.1 See Comparison
NZ_CP059132.1 See Comparison
NZ_CP049855.1 See Comparison
NZ_CP081886.1 See Comparison
AP024699.1 See Comparison
NZ_CP076321.1 See Comparison
NZ_CP044963.1 See Comparison
NZ_CP018996.1 See Comparison
NZ_CP019024.1 See Comparison
NZ_CP018972.1 See Comparison
NZ_CP018942.1 See Comparison
NZ_CP107169.1 See Comparison
NZ_CP039858.1 See Comparison
NZ_CP036207.1 See Comparison
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NZ_CP107146.1 See Comparison
NZ_CP124446.1 See Comparison
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NZ_CP124440.1 See Comparison
NZ_CP124489.1 See Comparison
NZ_CP124381.1 See Comparison
CP125049.1 See Comparison
NZ_CP124336.1 See Comparison
NZ_CP142962.1 See Comparison
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NZ_CP142948.1 See Comparison
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CP054323.1 See Comparison
NZ_CP048336.1 See Comparison
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NZ_CP065571.1 See Comparison
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NZ_AP021949.1 See Comparison
CP099117.1 See Comparison
NZ_CP121089.1 See Comparison
CP117208.1 See Comparison
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NZ_CP116163.1 See Comparison
NZ_CP103630.1 See Comparison
NZ_CP103473.1 See Comparison
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NZ_CP109881.1 See Comparison
NZ_CP099758.1 See Comparison
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NZ_CP093233.1 See Comparison
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NZ_CP091713.1 See Comparison
NZ_CP080063.1 See Comparison
NZ_CP048613.1 See Comparison
NZ_CP054167.1 See Comparison
NZ_CP049855.1 See Comparison
NZ_CP085072.1 See Comparison
NZ_CP081886.1 See Comparison
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NZ_CP018996.1 See Comparison
NZ_CP019024.1 See Comparison
NZ_CP018972.1 See Comparison
NZ_CP018942.1 See Comparison
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NZ_CP076321.1 See Comparison
NZ_CP107169.1 See Comparison
NZ_CP039858.1 See Comparison
NZ_CP023855.1 See Comparison
NZ_CP023833.1 See Comparison
NZ_CP031657.1 See Comparison
NZ_CP133456.1 See Comparison
NZ_CP058900.1 See Comparison
NZ_CP059342.1 See Comparison
NZ_CP058921.1 See Comparison
NZ_CP132732.1 See Comparison
NZ_CP036207.1 See Comparison
NZ_CP135711.1 See Comparison
NZ_CP135506.1 See Comparison
NZ_CP135208.1 See Comparison
NZ_CP107177.1 See Comparison
NZ_CP107146.1 See Comparison
NZ_CP124446.1 See Comparison
NZ_CP121218.1 See Comparison
NZ_CP124440.1 See Comparison
NZ_CP124489.1 See Comparison
NZ_CP124336.1 See Comparison
CP125049.1 See Comparison
NZ_CP142962.1 See Comparison
NZ_CP124381.1 See Comparison
NZ_CP150010.1 See Comparison
NZ_CP145643.1 See Comparison
NZ_CP148322.1 See Comparison
NZ_CP142948.1 See Comparison
NZ_CP142923.1 See Comparison
NZ_CP142942.1 See Comparison
NZ_CP142936.1 See Comparison
NZ_CP049106.1 See Comparison
CP056360.1 See Comparison
NZ_CP054234.1 See Comparison
CP054323.1 See Comparison
NZ_CP069985.1 See Comparison
NZ_CP048336.1 See Comparison
NZ_AP022210.1 See Comparison
NZ_LR890413.1 See Comparison
NZ_CP065571.1 See Comparison
NZ_AP021967.1 See Comparison
NZ_AP021949.1 See Comparison
CP099117.1 See Comparison
NZ_CP121089.1 See Comparison
CP117208.1 See Comparison
NZ_OP242284.1 See Comparison
NZ_CP116163.1 See Comparison
NZ_CP103630.1 See Comparison
NZ_CP110992.1 See Comparison
NZ_CP109881.1 See Comparison
NZ_CP099758.1 See Comparison
NZ_CP103473.1 See Comparison
NZ_OW967982.1 See Comparison
NZ_CP100538.1 See Comparison
AP026523.1 See Comparison
NZ_CP097369.1 See Comparison
NZ_OW968131.1 See Comparison
NZ_CP055172.1 See Comparison
NZ_CP093233.1 See Comparison
NZ_CP058884.1 See Comparison
NZ_CP091713.1 See Comparison
NZ_CP080063.1 See Comparison
NZ_CP048613.1 See Comparison
NZ_CP054167.1 See Comparison
NZ_CP049855.1 See Comparison
NZ_CP085072.1 See Comparison
NZ_CP081886.1 See Comparison
AP024699.1 See Comparison
NZ_CP076321.1 See Comparison
NZ_CP059132.1 See Comparison
NZ_CP023855.1 See Comparison
NZ_CP018972.1 See Comparison
NZ_CP018942.1 See Comparison
NZ_CP044963.1 See Comparison
NZ_CP018996.1 See Comparison
NZ_CP019024.1 See Comparison
NZ_CP039858.1 See Comparison
NZ_CP036207.1 See Comparison
NZ_CP023833.1 See Comparison
NZ_CP135506.1 See Comparison
NZ_CP031657.1 See Comparison
NZ_CP135711.1 See Comparison
NZ_CP133456.1 See Comparison
NZ_CP135208.1 See Comparison
NZ_CP058900.1 See Comparison
NZ_CP058921.1 See Comparison
NZ_CP059342.1 See Comparison
NZ_CP132732.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore