Plasmid NZ_CP055607.1

Sequence

Nucleotide Information

Accession NZ_CP055607.1
Description Escherichia fergusonii strain RHB41-C23 plasmid pRHB41-C23_9, complete sequence
Source refseq
Topology circular
Length 1552 bp
GC Content 0.52 %
Created at NCBI July 29, 2020



Assembly

Genome Data Information

Accession GCF_013591455.1
Assembly Coverage 145.858


Biosample

Curated Collection Information
Accession 15148431

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled pig faecal samples collected from floor of farm
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP060961.1 See Comparison
OW848849.1 See Comparison
NZ_CP081198.1 See Comparison
NZ_CP055035.1 See Comparison
NZ_CP080132.1 See Comparison
NZ_CP069655.1 See Comparison
NZ_OU342910.1 See Comparison
NZ_OU342904.1 See Comparison
NZ_CP075661.1 See Comparison
NZ_CP047018.1 See Comparison
NZ_CP069681.1 See Comparison
NZ_CP069675.1 See Comparison
NZ_CP069691.1 See Comparison
NZ_CP023858.1 See Comparison
NZ_CP014317.1 See Comparison
NZ_CP011143.1 See Comparison
NC_022661.1 See Comparison
NZ_CP045286.1 See Comparison
NZ_CP026493.1 See Comparison
NZ_CP133459.1 See Comparison
NZ_OY757131.1 See Comparison
NZ_OY757118.1 See Comparison
NZ_OY754363.1 See Comparison
NZ_CP115349.1 See Comparison
NZ_OX637967.1 See Comparison
NZ_CP082066.1 See Comparison
NZ_AP027211.1 See Comparison
NZ_CP139814.1 See Comparison
NZ_CP123028.1 See Comparison
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CP057823.1 See Comparison
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CP058051.1 See Comparison
NZ_CP058062.1 See Comparison
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NZ_CP063524.1 See Comparison
NZ_CP069592.1 See Comparison
NZ_LR890306.1 See Comparison
NZ_LR890316.1 See Comparison
NZ_LR890470.1 See Comparison
NZ_LR890341.1 See Comparison
NZ_LR890409.1 See Comparison
CP099158.1 See Comparison
NZ_CP057363.1 See Comparison
NZ_CP057482.1 See Comparison
NZ_CP057108.1 See Comparison
CP099165.1 See Comparison
OW848867.1 See Comparison
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CP098983.1 See Comparison
CP098995.1 See Comparison
NZ_CP116151.1 See Comparison
NZ_CP116187.1 See Comparison
AP026470.1 See Comparison
NZ_OX030707.1 See Comparison
NZ_OW968115.1 See Comparison
OW848849.1 See Comparison
NZ_OU342910.1 See Comparison
NZ_CP060961.1 See Comparison
NZ_CP055035.1 See Comparison
NZ_CP081198.1 See Comparison
NZ_CP080132.1 See Comparison
NZ_OU342904.1 See Comparison
NZ_CP047018.1 See Comparison
NZ_CP014317.1 See Comparison
NZ_CP011143.1 See Comparison
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NZ_CP045286.1 See Comparison
NZ_CP023858.1 See Comparison
NZ_CP026493.1 See Comparison
NZ_CP075661.1 See Comparison
NZ_CP069655.1 See Comparison
NZ_CP069681.1 See Comparison
NZ_CP069675.1 See Comparison
NZ_CP069691.1 See Comparison
NZ_CP082066.1 See Comparison
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NZ_OY757118.1 See Comparison
NZ_OY754363.1 See Comparison
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NZ_CP115349.1 See Comparison
NZ_CP063524.1 See Comparison
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NZ_CP123028.1 See Comparison
NZ_CP125153.1 See Comparison
NZ_CP125106.1 See Comparison
NZ_OY839921.1 See Comparison
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CP057823.1 See Comparison
CP057795.1 See Comparison
CP057704.1 See Comparison
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NZ_OX637967.1 See Comparison
NZ_CP139814.1 See Comparison
CP057428.1 See Comparison
CP057184.1 See Comparison
CP056984.1 See Comparison
CP056652.1 See Comparison
NZ_LR890306.1 See Comparison
NZ_CP069592.1 See Comparison
NZ_LR890316.1 See Comparison
NZ_LR890341.1 See Comparison
NZ_LR890409.1 See Comparison
NZ_CP060428.1 See Comparison
NZ_LR890470.1 See Comparison
CP058045.1 See Comparison
CP058051.1 See Comparison
NZ_CP058062.1 See Comparison
CP099158.1 See Comparison
NZ_CP057363.1 See Comparison
NZ_CP057482.1 See Comparison
NZ_CP057108.1 See Comparison
NZ_CP099363.1 See Comparison
CP099165.1 See Comparison
NZ_CP116151.1 See Comparison
CP098983.1 See Comparison
CP098995.1 See Comparison
NZ_CP116187.1 See Comparison
AP026470.1 See Comparison
NZ_OX030707.1 See Comparison
NZ_OW968115.1 See Comparison
NZ_CP060961.1 See Comparison
OW848867.1 See Comparison
OW848849.1 See Comparison
NZ_CP081198.1 See Comparison
NZ_CP055035.1 See Comparison
NZ_OU342910.1 See Comparison
NZ_CP080132.1 See Comparison
NZ_OU342904.1 See Comparison
NZ_CP047018.1 See Comparison
NZ_CP075661.1 See Comparison
NZ_CP069655.1 See Comparison
NZ_CP069681.1 See Comparison
NZ_CP069675.1 See Comparison
NZ_CP069691.1 See Comparison
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NZ_CP014317.1 See Comparison
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NZ_CP045286.1 See Comparison
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NZ_OY757131.1 See Comparison
NZ_OY757118.1 See Comparison
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OW848867.1 See Comparison
NZ_AP027211.1 See Comparison
NZ_CP123028.1 See Comparison
NZ_CP139814.1 See Comparison
NZ_OY839921.1 See Comparison
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CP057795.1 See Comparison
CP057704.1 See Comparison
CP057428.1 See Comparison
CP057184.1 See Comparison
CP056984.1 See Comparison
CP056652.1 See Comparison
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NZ_CP063524.1 See Comparison
NZ_CP069592.1 See Comparison
NZ_LR890316.1 See Comparison
NZ_LR890470.1 See Comparison
NZ_CP060428.1 See Comparison
CP058045.1 See Comparison
CP058051.1 See Comparison
NZ_CP058062.1 See Comparison
CP099165.1 See Comparison
AP026470.1 See Comparison
NZ_OX030707.1 See Comparison
NZ_OW968115.1 See Comparison
NZ_CP133459.1 See Comparison
NZ_CP082066.1 See Comparison
NZ_OX637967.1 See Comparison
NZ_CP125153.1 See Comparison
NZ_CP125106.1 See Comparison
NZ_LR890306.1 See Comparison
NZ_LR890341.1 See Comparison
NZ_LR890409.1 See Comparison
NZ_CP057363.1 See Comparison
NZ_CP057482.1 See Comparison
NZ_CP057108.1 See Comparison
NZ_CP099363.1 See Comparison
CP098983.1 See Comparison
CP098995.1 See Comparison
CP099158.1 See Comparison
NZ_CP116151.1 See Comparison
NZ_CP116187.1 See Comparison
OW848849.1 See Comparison
NZ_CP081198.1 See Comparison
NZ_CP060961.1 See Comparison
NZ_CP055035.1 See Comparison
NZ_CP080132.1 See Comparison
NZ_CP069655.1 See Comparison
NZ_CP075661.1 See Comparison
NZ_OU342910.1 See Comparison
NZ_OU342904.1 See Comparison
NZ_CP047018.1 See Comparison
NZ_CP069681.1 See Comparison
NZ_CP069675.1 See Comparison
NZ_CP069691.1 See Comparison
NZ_CP014317.1 See Comparison
NC_022661.1 See Comparison
NZ_CP011143.1 See Comparison
NZ_CP023858.1 See Comparison
NZ_CP045286.1 See Comparison
NZ_OY757131.1 See Comparison
NZ_CP026493.1 See Comparison
NZ_OY757118.1 See Comparison
NZ_CP133459.1 See Comparison
NZ_OY754363.1 See Comparison
NZ_CP115349.1 See Comparison
NZ_CP082066.1 See Comparison
NZ_AP027211.1 See Comparison
NZ_OX637967.1 See Comparison
NZ_CP125153.1 See Comparison
NZ_CP125106.1 See Comparison
NZ_CP123028.1 See Comparison
CP057184.1 See Comparison
NZ_CP139814.1 See Comparison
NZ_OY839921.1 See Comparison
CP058006.1 See Comparison
CP057823.1 See Comparison
CP057795.1 See Comparison
CP057704.1 See Comparison
CP056984.1 See Comparison
CP057428.1 See Comparison
CP056652.1 See Comparison
NZ_LR890316.1 See Comparison
NZ_CP054362.1 See Comparison
NZ_CP069592.1 See Comparison
NZ_CP063524.1 See Comparison
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NZ_LR890306.1 See Comparison
NZ_LR890341.1 See Comparison
NZ_LR890409.1 See Comparison
NZ_CP060428.1 See Comparison
NZ_CP060961.1 See Comparison
CP058045.1 See Comparison
CP058051.1 See Comparison
NZ_CP058062.1 See Comparison
NZ_CP057363.1 See Comparison
NZ_CP057482.1 See Comparison
NZ_CP057108.1 See Comparison
NZ_CP099363.1 See Comparison
CP098983.1 See Comparison
CP098995.1 See Comparison
CP099158.1 See Comparison
CP099165.1 See Comparison
NZ_CP116151.1 See Comparison
NZ_CP116187.1 See Comparison
AP026470.1 See Comparison
OW848867.1 See Comparison
OW848849.1 See Comparison
NZ_OX030707.1 See Comparison
NZ_OW968115.1 See Comparison
NZ_CP055035.1 See Comparison
NZ_OU342910.1 See Comparison
NZ_CP081198.1 See Comparison
NZ_CP080132.1 See Comparison
NZ_CP075661.1 See Comparison
NZ_OU342904.1 See Comparison
NZ_CP047018.1 See Comparison
NZ_CP011143.1 See Comparison
NZ_CP069655.1 See Comparison
NZ_CP069681.1 See Comparison
NZ_CP069675.1 See Comparison
NZ_CP069691.1 See Comparison
NZ_CP014317.1 See Comparison
NZ_CP125153.1 See Comparison
NC_022661.1 See Comparison
NZ_CP045286.1 See Comparison
NZ_CP023858.1 See Comparison
NZ_CP026493.1 See Comparison
NZ_CP082066.1 See Comparison
NZ_AP027211.1 See Comparison
NZ_OX637967.1 See Comparison
NZ_CP123028.1 See Comparison
NZ_OY757131.1 See Comparison
NZ_OY757118.1 See Comparison
NZ_OY754363.1 See Comparison
NZ_CP133459.1 See Comparison
NZ_CP115349.1 See Comparison
NZ_CP139814.1 See Comparison
NZ_CP125106.1 See Comparison
CP058006.1 See Comparison
NZ_OY839921.1 See Comparison
NZ_CP055607.1 See Comparison
CP057823.1 See Comparison
CP057795.1 See Comparison
CP057704.1 See Comparison
CP057428.1 See Comparison
CP057184.1 See Comparison
CP056984.1 See Comparison
NZ_CP054362.1 See Comparison
CP056652.1 See Comparison
NZ_CP116151.1 See Comparison
NZ_CP063524.1 See Comparison
NZ_CP069592.1 See Comparison
NZ_LR890316.1 See Comparison
NZ_LR890470.1 See Comparison
NZ_CP057363.1 See Comparison
NZ_CP057482.1 See Comparison
NZ_CP057108.1 See Comparison
NZ_CP099363.1 See Comparison
CP098983.1 See Comparison
NZ_LR890306.1 See Comparison
NZ_LR890341.1 See Comparison
NZ_LR890409.1 See Comparison
NZ_CP060428.1 See Comparison
CP058045.1 See Comparison
CP058051.1 See Comparison
NZ_CP058062.1 See Comparison
CP098995.1 See Comparison
CP099158.1 See Comparison
CP099165.1 See Comparison
NZ_CP116187.1 See Comparison
NZ_OW968115.1 See Comparison
AP026470.1 See Comparison
NZ_OX030707.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore