Plasmid NZ_CP055604.1

Sequence

Nucleotide Information

Accession	NZ_CP055604.1
Description	Escherichia fergusonii strain RHB41-C23 plasmid pRHB41-C23_6, complete sequence
Source	refseq
Topology	circular
Length	6647 bp
GC Content	0.49 %
Created at NCBI	July 29, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia fergusonii (564)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_fergusonii (564)
Strain

Assembly

Genome Data Information

Accession	GCF_013591455.1
Assembly Coverage	145.858

Biosample

Curated Collection Information

Accession	15148431

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	United Kingdom
Original Query Type	name
Coordinates (Lat/Lon)	54.70/-3.28
Address	United Kingdom

ECOSYSTEM

Original Query	culture,Pooled pig faecal samples collected from floor of farm
Classification	cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Sus scrofa (9823)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP127253.1	See Comparison
NZ_CP124432.1	See Comparison
NZ_CP122937.1	See Comparison
NZ_CP122628.1	See Comparison
NZ_OZ038592.1	See Comparison
NZ_CP131912.1	See Comparison
NZ_CP149315.1	See Comparison
NZ_CP149310.1	See Comparison
NZ_AP027656.1	See Comparison
NZ_AP027787.1	See Comparison
NZ_AP027853.1	See Comparison
NZ_CP055679.1	See Comparison
CP057624.1	See Comparison
NZ_CP047581.1	See Comparison
NZ_LT985237.1	See Comparison
NZ_CP070126.1	See Comparison
NZ_CP057102.1	See Comparison
NZ_OP242316.1	See Comparison
NZ_CP103335.1	See Comparison
OW849287.1	See Comparison
NZ_CP074023.1	See Comparison
NZ_CP101204.1	See Comparison
NZ_CP080060.1	See Comparison
OW849392.1	See Comparison
OW849254.1	See Comparison
OW849281.1	See Comparison
NZ_CP060978.1	See Comparison
NZ_CP097202.1	See Comparison
NZ_CP086477.1	See Comparison
NZ_CP086487.1	See Comparison
NZ_CP086497.1	See Comparison
NZ_CP086507.1	See Comparison
NZ_CP086517.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP055117.1	See Comparison
NZ_MN868651.1	See Comparison
NZ_CP091536.1	See Comparison
NZ_CP018943.1	See Comparison
CP090271.1	See Comparison
CP088359.1	See Comparison
NZ_AP024129.1	See Comparison
NZ_CP124432.1	See Comparison
OY856298.1	See Comparison
NZ_CP127253.1	See Comparison
NZ_CP016584.1	See Comparison
NZ_CP016519.1	See Comparison
NZ_CP016513.1	See Comparison
NZ_CP041097.1	See Comparison
NZ_CP115373.1	See Comparison
NZ_CP122937.1	See Comparison
NZ_CP122628.1	See Comparison
NZ_OZ038592.1	See Comparison
NZ_CP131912.1	See Comparison
NZ_CP149315.1	See Comparison
NZ_CP149310.1	See Comparison
NZ_AP027656.1	See Comparison
NZ_AP027853.1	See Comparison
NZ_AP027787.1	See Comparison
CP057624.1	See Comparison
NZ_CP055679.1	See Comparison
NZ_CP055604.1	See Comparison
NZ_CP047581.1	See Comparison
NZ_OP242316.1	See Comparison
NZ_CP070126.1	See Comparison
NZ_CP057102.1	See Comparison
NZ_LT985237.1	See Comparison
NZ_CP103335.1	See Comparison
NZ_CP074023.1	See Comparison
NZ_CP101204.1	See Comparison
OW849392.1	See Comparison
NZ_CP080060.1	See Comparison
NZ_CP054981.1	See Comparison
OW849254.1	See Comparison
NZ_CP097202.1	See Comparison
NZ_CP086497.1	See Comparison
NZ_CP086507.1	See Comparison
NZ_CP086517.1	See Comparison
OW849287.1	See Comparison
OW849281.1	See Comparison
NZ_CP086477.1	See Comparison
NZ_CP086487.1	See Comparison
NZ_CP060978.1	See Comparison
NZ_CP055117.1	See Comparison
NZ_CP091536.1	See Comparison
NZ_MN868651.1	See Comparison
CP090271.1	See Comparison
CP088359.1	See Comparison
NZ_CP018943.1	See Comparison
NZ_AP024129.1	See Comparison
NZ_CP041097.1	See Comparison
NZ_CP016584.1	See Comparison
NZ_CP016519.1	See Comparison
NZ_CP016513.1	See Comparison
NZ_CP127253.1	See Comparison
OY856298.1	See Comparison
NZ_CP115373.1	See Comparison
NZ_CP131912.1	See Comparison
NZ_CP124432.1	See Comparison
NZ_CP122937.1	See Comparison
NZ_CP122628.1	See Comparison
NZ_OZ038592.1	See Comparison
NZ_CP149315.1	See Comparison
NZ_CP149310.1	See Comparison
NZ_AP027656.1	See Comparison
NZ_AP027787.1	See Comparison
NZ_AP027853.1	See Comparison
NZ_CP055679.1	See Comparison
CP057624.1	See Comparison
NZ_CP047581.1	See Comparison
NZ_CP080060.1	See Comparison
NZ_LT985237.1	See Comparison
NZ_CP074023.1	See Comparison
NZ_CP101204.1	See Comparison
NZ_CP070126.1	See Comparison
NZ_CP057102.1	See Comparison
NZ_OP242316.1	See Comparison
NZ_CP103335.1	See Comparison
NZ_AP024129.1	See Comparison
NZ_CP097202.1	See Comparison
NZ_CP086497.1	See Comparison
NZ_CP086507.1	See Comparison
NZ_CP086517.1	See Comparison
NZ_CP060978.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP055117.1	See Comparison
NZ_CP091536.1	See Comparison
CP090271.1	See Comparison
NZ_MN868651.1	See Comparison
CP088359.1	See Comparison
OW849392.1	See Comparison
OW849287.1	See Comparison
OW849281.1	See Comparison
OW849254.1	See Comparison
NZ_CP086477.1	See Comparison
NZ_CP086487.1	See Comparison
NZ_CP018943.1	See Comparison
NZ_CP041097.1	See Comparison
NZ_CP016584.1	See Comparison
NZ_CP016519.1	See Comparison
NZ_CP016513.1	See Comparison
NZ_CP115373.1	See Comparison
OY856298.1	See Comparison
NZ_CP127253.1	See Comparison
NZ_CP124432.1	See Comparison
NZ_CP122937.1	See Comparison
NZ_CP122628.1	See Comparison
NZ_OZ038592.1	See Comparison
NZ_CP131912.1	See Comparison
NZ_CP149315.1	See Comparison
NZ_CP149310.1	See Comparison
NZ_AP027656.1	See Comparison
NZ_AP027787.1	See Comparison
NZ_AP027853.1	See Comparison
NZ_CP055679.1	See Comparison
CP057624.1	See Comparison
NZ_CP127253.1	See Comparison
NZ_CP047581.1	See Comparison
NZ_LT985237.1	See Comparison
NZ_CP074023.1	See Comparison
NZ_CP101204.1	See Comparison
NZ_CP080060.1	See Comparison
OW849392.1	See Comparison
OW849287.1	See Comparison
OW849281.1	See Comparison
OW849254.1	See Comparison
NZ_CP097202.1	See Comparison
NZ_CP086497.1	See Comparison
NZ_CP086507.1	See Comparison
NZ_CP086517.1	See Comparison
OY856298.1	See Comparison
NZ_CP070126.1	See Comparison
NZ_CP057102.1	See Comparison
NZ_OP242316.1	See Comparison
NZ_CP103335.1	See Comparison
NZ_CP086477.1	See Comparison
NZ_CP086487.1	See Comparison
NZ_CP060978.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP055117.1	See Comparison
NZ_CP091536.1	See Comparison
CP090271.1	See Comparison
NZ_MN868651.1	See Comparison
CP088359.1	See Comparison
NZ_AP024129.1	See Comparison
NZ_CP018943.1	See Comparison
NZ_CP016584.1	See Comparison
NZ_CP016519.1	See Comparison
NZ_CP016513.1	See Comparison
NZ_CP041097.1	See Comparison
NZ_CP115373.1	See Comparison
NZ_CP124432.1	See Comparison
NZ_CP122628.1	See Comparison
NZ_AP027656.1	See Comparison
NZ_CP122937.1	See Comparison
NZ_OZ038592.1	See Comparison
NZ_CP131912.1	See Comparison
NZ_CP149315.1	See Comparison
NZ_CP149310.1	See Comparison
NZ_AP027787.1	See Comparison
NZ_AP027853.1	See Comparison
NZ_CP101204.1	See Comparison
NZ_CP055679.1	See Comparison
CP057624.1	See Comparison
NZ_CP047581.1	See Comparison
NZ_CP070126.1	See Comparison
NZ_CP103335.1	See Comparison
NZ_LT985237.1	See Comparison
NZ_CP057102.1	See Comparison
NZ_OP242316.1	See Comparison
NZ_CP074023.1	See Comparison
OW849392.1	See Comparison
NZ_CP080060.1	See Comparison
NZ_AP024129.1	See Comparison
OW849287.1	See Comparison
OW849281.1	See Comparison
OW849254.1	See Comparison
NZ_CP086477.1	See Comparison
NZ_CP086487.1	See Comparison
NZ_CP091536.1	See Comparison
CP088359.1	See Comparison
NZ_CP097202.1	See Comparison
NZ_CP086497.1	See Comparison
NZ_CP086507.1	See Comparison
NZ_CP086517.1	See Comparison
NZ_CP060978.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP055117.1	See Comparison
CP090271.1	See Comparison
NZ_MN868651.1	See Comparison
NZ_CP016584.1	See Comparison
NZ_CP018943.1	See Comparison
NZ_CP016519.1	See Comparison
NZ_CP016513.1	See Comparison
NZ_CP041097.1	See Comparison
OY856298.1	See Comparison
NZ_OZ038592.1	See Comparison
NZ_CP124432.1	See Comparison
NZ_CP122628.1	See Comparison
NZ_CP115373.1	See Comparison
NZ_CP127253.1	See Comparison
NZ_CP131912.1	See Comparison
NZ_CP149315.1	See Comparison
NZ_CP149310.1	See Comparison
NZ_AP027656.1	See Comparison
NZ_AP027787.1	See Comparison
NZ_AP027853.1	See Comparison
NZ_CP103335.1	See Comparison
NZ_CP122937.1	See Comparison
NZ_LT985237.1	See Comparison
NZ_CP055679.1	See Comparison
CP057624.1	See Comparison
NZ_CP047581.1	See Comparison
NZ_CP070126.1	See Comparison
NZ_CP057102.1	See Comparison
NZ_OP242316.1	See Comparison
NZ_CP074023.1	See Comparison
NZ_AP024129.1	See Comparison
NZ_CP101204.1	See Comparison
NZ_CP080060.1	See Comparison
OW849392.1	See Comparison
NZ_CP086497.1	See Comparison
NZ_CP086507.1	See Comparison
NZ_CP086517.1	See Comparison
NZ_CP060978.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP055117.1	See Comparison
OW849287.1	See Comparison
OW849281.1	See Comparison
OW849254.1	See Comparison
NZ_CP097202.1	See Comparison
NZ_CP086477.1	See Comparison
NZ_CP086487.1	See Comparison
NZ_CP091536.1	See Comparison
CP090271.1	See Comparison
NZ_MN868651.1	See Comparison
CP088359.1	See Comparison
NZ_CP018943.1	See Comparison
NZ_CP016519.1	See Comparison
NZ_CP016513.1	See Comparison
OY856298.1	See Comparison
NZ_CP016584.1	See Comparison
NZ_CP041097.1	See Comparison
NZ_CP115373.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore