Plasmid NZ_LR890341.1

Sequence

Nucleotide Information

Accession	NZ_LR890341.1
Description	Escherichia coli strain MINF_9A isolate MINF_9A plasmid 8, complete sequence
Source	refseq
Topology	circular
Length	1552 bp
GC Content	0.52 %
Created at NCBI	Oct. 30, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_904863255.1
Assembly Coverage	121

Biosample

Curated Collection Information

Accession	4089384

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Australia
Original Query Type	name
Coordinates (Lat/Lon)	-24.78/134.76
Address	Australia

ECOSYSTEM

Original Query	Homo sapiens,blood
Classification	blood,circulatory_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	diseased
DOID/SYMP	Disease (DOID:4 ) A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP057363.1	See Comparison
NZ_CP057482.1	See Comparison
NZ_CP057108.1	See Comparison
NZ_CP099363.1	See Comparison
CP098983.1	See Comparison
CP099158.1	See Comparison
CP099165.1	See Comparison
NZ_CP116151.1	See Comparison
NZ_CP116187.1	See Comparison
NZ_OX030707.1	See Comparison
NZ_OW968115.1	See Comparison
OW848867.1	See Comparison
OW848849.1	See Comparison
NZ_CP055035.1	See Comparison
NZ_CP081198.1	See Comparison
NZ_CP080132.1	See Comparison
NZ_CP133459.1	See Comparison
NZ_CP075661.1	See Comparison
NZ_CP069655.1	See Comparison
NZ_CP069681.1	See Comparison
NZ_CP069675.1	See Comparison
NZ_OY757131.1	See Comparison
NZ_OY757118.1	See Comparison
NZ_CP069691.1	See Comparison
NZ_OY754363.1	See Comparison
NZ_CP115349.1	See Comparison
NZ_CP123028.1	See Comparison
NZ_OX637967.1	See Comparison
NZ_LR890306.1	See Comparison
NZ_CP125153.1	See Comparison
NZ_OY839921.1	See Comparison
CP058006.1	See Comparison
NZ_CP055607.1	See Comparison
CP057823.1	See Comparison
CP057795.1	See Comparison
CP057704.1	See Comparison
CP057428.1	See Comparison
CP057184.1	See Comparison
NZ_CP125106.1	See Comparison
CP056652.1	See Comparison
NZ_LR890316.1	See Comparison
NZ_LR890470.1	See Comparison
NZ_CP055035.1	See Comparison
NZ_LR890409.1	See Comparison
NZ_CP099363.1	See Comparison
CP098983.1	See Comparison
CP099158.1	See Comparison
CP099165.1	See Comparison
NZ_CP116151.1	See Comparison
NZ_CP116187.1	See Comparison
CP058045.1	See Comparison
CP058051.1	See Comparison
NZ_CP058062.1	See Comparison
NZ_CP057363.1	See Comparison
NZ_CP057482.1	See Comparison
NZ_CP057108.1	See Comparison
NZ_OX030707.1	See Comparison
NZ_OW968115.1	See Comparison
OW848867.1	See Comparison
OW848849.1	See Comparison
NZ_CP080132.1	See Comparison
NZ_CP081198.1	See Comparison
NZ_CP075661.1	See Comparison
NZ_CP123028.1	See Comparison
NZ_OY754363.1	See Comparison
NZ_CP133459.1	See Comparison
NZ_CP115349.1	See Comparison
NZ_OX637967.1	See Comparison
NZ_CP069655.1	See Comparison
NZ_CP069681.1	See Comparison
NZ_CP069675.1	See Comparison
NZ_CP069691.1	See Comparison
NZ_OY757131.1	See Comparison
NZ_OY757118.1	See Comparison
NZ_CP125153.1	See Comparison
NZ_CP125106.1	See Comparison
NZ_CP055607.1	See Comparison
NZ_OY839921.1	See Comparison
CP057823.1	See Comparison
CP057795.1	See Comparison
CP057704.1	See Comparison
CP058006.1	See Comparison
CP057428.1	See Comparison
CP057184.1	See Comparison
CP056652.1	See Comparison
NZ_CP116151.1	See Comparison
NZ_LR890306.1	See Comparison
NZ_LR890316.1	See Comparison
CP058045.1	See Comparison
CP058051.1	See Comparison
NZ_CP058062.1	See Comparison
NZ_CP057363.1	See Comparison
NZ_CP057482.1	See Comparison
NZ_CP057108.1	See Comparison
NZ_CP099363.1	See Comparison
CP098983.1	See Comparison
CP099158.1	See Comparison
CP099165.1	See Comparison
NZ_LR890470.1	See Comparison
NZ_LR890409.1	See Comparison
NZ_CP116187.1	See Comparison
NZ_OY754363.1	See Comparison
OW848849.1	See Comparison
NZ_CP055035.1	See Comparison
NZ_OX030707.1	See Comparison
NZ_OW968115.1	See Comparison
OW848867.1	See Comparison
NZ_CP081198.1	See Comparison
NZ_CP080132.1	See Comparison
NZ_CP075661.1	See Comparison
NZ_CP069655.1	See Comparison
NZ_CP069681.1	See Comparison
NZ_CP069675.1	See Comparison
NZ_CP069691.1	See Comparison
NZ_OY757131.1	See Comparison
NZ_OY757118.1	See Comparison
NZ_CP133459.1	See Comparison
CP058006.1	See Comparison
NZ_CP115349.1	See Comparison
NZ_CP123028.1	See Comparison
NZ_CP125153.1	See Comparison
NZ_CP125106.1	See Comparison
NZ_OX637967.1	See Comparison
NZ_OY839921.1	See Comparison
NZ_CP055607.1	See Comparison
CP057823.1	See Comparison
CP057795.1	See Comparison
CP057704.1	See Comparison
CP057428.1	See Comparison
CP057184.1	See Comparison
CP056652.1	See Comparison
NZ_OX030707.1	See Comparison
NZ_LR890306.1	See Comparison
NZ_LR890316.1	See Comparison
NZ_LR890470.1	See Comparison
NZ_LR890341.1	See Comparison
NZ_LR890409.1	See Comparison
CP058045.1	See Comparison
CP058051.1	See Comparison
NZ_CP058062.1	See Comparison
NZ_CP057363.1	See Comparison
NZ_CP057482.1	See Comparison
NZ_CP057108.1	See Comparison
NZ_CP099363.1	See Comparison
CP098983.1	See Comparison
CP099158.1	See Comparison
CP099165.1	See Comparison
NZ_CP116151.1	See Comparison
NZ_CP116187.1	See Comparison
NZ_OW968115.1	See Comparison
OW848867.1	See Comparison
NZ_CP055035.1	See Comparison
OW848849.1	See Comparison
NZ_CP080132.1	See Comparison
NZ_CP081198.1	See Comparison
NZ_CP123028.1	See Comparison
NZ_CP075661.1	See Comparison
NZ_CP069655.1	See Comparison
NZ_CP069681.1	See Comparison
NZ_CP069675.1	See Comparison
NZ_CP069691.1	See Comparison
NZ_OX637967.1	See Comparison
NZ_OY757131.1	See Comparison
NZ_OY757118.1	See Comparison
NZ_OY754363.1	See Comparison
NZ_CP133459.1	See Comparison
NZ_CP115349.1	See Comparison
NZ_CP125153.1	See Comparison
NZ_CP125106.1	See Comparison
NZ_CP057482.1	See Comparison
NZ_OY839921.1	See Comparison
CP058006.1	See Comparison
NZ_CP055607.1	See Comparison
CP057823.1	See Comparison
CP057795.1	See Comparison
CP057704.1	See Comparison
CP057428.1	See Comparison
CP057184.1	See Comparison
CP056652.1	See Comparison
NZ_LR890306.1	See Comparison
NZ_LR890316.1	See Comparison
NZ_LR890470.1	See Comparison
NZ_LR890409.1	See Comparison
CP058045.1	See Comparison
CP058051.1	See Comparison
NZ_CP058062.1	See Comparison
NZ_CP057108.1	See Comparison
NZ_CP099363.1	See Comparison
NZ_CP057363.1	See Comparison
CP098983.1	See Comparison
CP099158.1	See Comparison
CP099165.1	See Comparison
NZ_CP116151.1	See Comparison
NZ_CP116187.1	See Comparison
NZ_CP055035.1	See Comparison
NZ_OX030707.1	See Comparison
NZ_OW968115.1	See Comparison
OW848867.1	See Comparison
OW848849.1	See Comparison
NZ_CP080132.1	See Comparison
NZ_CP081198.1	See Comparison
NZ_CP075661.1	See Comparison
NZ_CP123028.1	See Comparison
NZ_CP069655.1	See Comparison
NZ_CP069681.1	See Comparison
NZ_CP069675.1	See Comparison
NZ_CP069691.1	See Comparison
NZ_OY754363.1	See Comparison
NZ_CP133459.1	See Comparison
NZ_OX637967.1	See Comparison
NZ_OY757131.1	See Comparison
NZ_OY757118.1	See Comparison
NZ_CP115349.1	See Comparison
NZ_CP125153.1	See Comparison
NZ_CP125106.1	See Comparison
NZ_OY839921.1	See Comparison
CP058006.1	See Comparison
NZ_CP055607.1	See Comparison
CP057823.1	See Comparison
CP057795.1	See Comparison
CP057704.1	See Comparison
CP057428.1	See Comparison
NZ_CP116151.1	See Comparison
NZ_LR890316.1	See Comparison
NZ_LR890470.1	See Comparison
NZ_LR890409.1	See Comparison
CP058045.1	See Comparison
CP058051.1	See Comparison
NZ_CP058062.1	See Comparison
NZ_CP057363.1	See Comparison
NZ_CP057482.1	See Comparison
NZ_CP057108.1	See Comparison
NZ_CP099363.1	See Comparison
CP098983.1	See Comparison
CP099158.1	See Comparison
CP099165.1	See Comparison
CP057184.1	See Comparison
CP056652.1	See Comparison
NZ_LR890306.1	See Comparison
NZ_CP116187.1	See Comparison
NZ_CP081198.1	See Comparison
NZ_OW968115.1	See Comparison
NZ_OX030707.1	See Comparison
OW848867.1	See Comparison
OW848849.1	See Comparison
NZ_CP055035.1	See Comparison
NZ_CP080132.1	See Comparison
NZ_CP075661.1	See Comparison
NZ_CP069655.1	See Comparison
NZ_CP069681.1	See Comparison
NZ_CP069675.1	See Comparison
NZ_CP069691.1	See Comparison
NZ_OY757131.1	See Comparison
NZ_OY757118.1	See Comparison
NZ_CP123028.1	See Comparison
NZ_CP115349.1	See Comparison
NZ_OY754363.1	See Comparison
NZ_CP133459.1	See Comparison
NZ_OX637967.1	See Comparison
NZ_CP125106.1	See Comparison
CP056652.1	See Comparison
NZ_CP125153.1	See Comparison
NZ_OY839921.1	See Comparison
CP058006.1	See Comparison
NZ_CP055607.1	See Comparison
CP057823.1	See Comparison
CP057795.1	See Comparison
CP057704.1	See Comparison
NZ_LR890470.1	See Comparison
CP057428.1	See Comparison
CP057184.1	See Comparison
NZ_LR890316.1	See Comparison
NZ_LR890306.1	See Comparison
NZ_LR890409.1	See Comparison
CP058051.1	See Comparison
CP058045.1	See Comparison
NZ_CP058062.1	See Comparison

Identical Plasmids

100% Sequence Identity

NZ_CP116151.1

Sequence

Accession: NZ_CP116151.1
Description: Escherichia coli strain DETEC-P622 plasmid pDETEC59, complete sequence
Source: refseq
Created at NCBI: Jan. 25, 2023

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 31988467

GEOGRAPHICAL INFORMATION

Original Query: China,Guangzhou
Original Query Type: name
Address: China,Guangzhou
Coordinates (Lat/Lon): 23.13/113.26

ECOSYSTEM

Original Query: whole organism,ICU patient rectal swab
Classification: disease,gastrointestinal_system,host_associated,rectal
Host-associated Taxon:
- Homo sapiens (9606)

DISEASE

Original Query: None
DOID/SYMP:
- Disease (DOID:4 )

Visualization

NZ_CP116187.1

Sequence

Accession: NZ_CP116187.1
Description: Escherichia coli strain DETEC-E480 plasmid pDETEC59, complete sequence
Source: refseq
Created at NCBI: Jan. 25, 2023

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 31988416

GEOGRAPHICAL INFORMATION

Original Query: China,Guangzhou
Original Query Type: name
Address: China,Guangzhou
Coordinates (Lat/Lon): 23.13/113.26

ECOSYSTEM

Original Query: whole organism,button
Classification: anthropogenic,host_associated
Host-associated Taxon:

Visualization

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore