Plasmid NZ_CP116151.1

Sequence

Nucleotide Information

Accession NZ_CP116151.1
Description Escherichia coli strain DETEC-P622 plasmid pDETEC59, complete sequence
Source refseq
Topology circular
Length 1552 bp
GC Content 0.52 %
Created at NCBI Jan. 25, 2023



Assembly

Genome Data Information

Accession GCF_027944835.1
Assembly Coverage 10


Biosample

Curated Collection Information
Accession 31988467

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Guangzhou
Original Query Type name
Coordinates (Lat/Lon) 23.13/113.26
Address China,Guangzhou

ECOSYSTEM
Original Query whole organism,ICU patient rectal swab
Classification disease,gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_LR890341.1 See Comparison
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NZ_CP057363.1 See Comparison
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NZ_CP099363.1 See Comparison
CP098983.1 See Comparison
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NZ_OX030707.1 See Comparison
NZ_OW968115.1 See Comparison
OW848867.1 See Comparison
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NZ_CP069675.1 See Comparison
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NZ_OY757131.1 See Comparison
NZ_OY757118.1 See Comparison
NZ_OY754363.1 See Comparison
NZ_CP133459.1 See Comparison
NZ_CP115349.1 See Comparison
NZ_OY839921.1 See Comparison
NZ_CP123028.1 See Comparison
NZ_CP125153.1 See Comparison
NZ_CP125106.1 See Comparison
CP056652.1 See Comparison
CP058006.1 See Comparison
NZ_CP055607.1 See Comparison
CP057823.1 See Comparison
CP057795.1 See Comparison
CP057704.1 See Comparison
CP057428.1 See Comparison
CP057184.1 See Comparison
NZ_LR890306.1 See Comparison
NZ_LR890341.1 See Comparison
NZ_LR890409.1 See Comparison
NZ_LR890316.1 See Comparison
CP099158.1 See Comparison
NZ_LR890470.1 See Comparison
CP058045.1 See Comparison
CP058051.1 See Comparison
NZ_CP058062.1 See Comparison
NZ_CP057363.1 See Comparison
NZ_CP057482.1 See Comparison
NZ_CP057108.1 See Comparison
CP099165.1 See Comparison
NZ_CP116151.1 See Comparison
NZ_CP099363.1 See Comparison
CP098983.1 See Comparison
NZ_CP116187.1 See Comparison
NZ_OX030707.1 See Comparison
NZ_CP080132.1 See Comparison
NZ_OW968115.1 See Comparison
NZ_CP055035.1 See Comparison
NZ_CP081198.1 See Comparison
OW848867.1 See Comparison
OW848849.1 See Comparison
NZ_CP075661.1 See Comparison
NZ_CP069675.1 See Comparison
NZ_CP069691.1 See Comparison
NZ_OY754363.1 See Comparison
NZ_CP069655.1 See Comparison
NZ_CP069681.1 See Comparison
NZ_OY757131.1 See Comparison
NZ_OY757118.1 See Comparison
NZ_CP133459.1 See Comparison
NZ_CP115349.1 See Comparison
NZ_OX637967.1 See Comparison
NZ_CP125153.1 See Comparison
NZ_CP125106.1 See Comparison
NZ_CP123028.1 See Comparison
NZ_OY839921.1 See Comparison
CP056652.1 See Comparison
CP058006.1 See Comparison
NZ_CP055607.1 See Comparison
CP057823.1 See Comparison
CP057795.1 See Comparison
CP057704.1 See Comparison
CP057428.1 See Comparison
CP057184.1 See Comparison
NZ_LR890306.1 See Comparison
NZ_LR890316.1 See Comparison
NZ_CP057363.1 See Comparison
NZ_LR890470.1 See Comparison
NZ_LR890341.1 See Comparison
NZ_LR890409.1 See Comparison
CP058045.1 See Comparison
CP058051.1 See Comparison
NZ_CP058062.1 See Comparison
NZ_CP099363.1 See Comparison
CP098983.1 See Comparison
NZ_CP057482.1 See Comparison
NZ_CP057108.1 See Comparison
CP099158.1 See Comparison
CP099165.1 See Comparison
NZ_CP116187.1 See Comparison
NZ_OX030707.1 See Comparison
NZ_OW968115.1 See Comparison
OW848849.1 See Comparison
NZ_CP081198.1 See Comparison
OW848867.1 See Comparison
NZ_CP055035.1 See Comparison
NZ_CP075661.1 See Comparison
NZ_CP080132.1 See Comparison
NZ_OY754363.1 See Comparison
NZ_CP069655.1 See Comparison
NZ_CP069681.1 See Comparison
NZ_CP069675.1 See Comparison
NZ_CP069691.1 See Comparison
NZ_OY757131.1 See Comparison
NZ_OY757118.1 See Comparison
NZ_OX637967.1 See Comparison
NZ_CP133459.1 See Comparison
NZ_CP115349.1 See Comparison
NZ_CP123028.1 See Comparison
NZ_CP125153.1 See Comparison
NZ_CP125106.1 See Comparison
CP058006.1 See Comparison
NZ_CP055607.1 See Comparison
CP057823.1 See Comparison
CP057795.1 See Comparison
CP057704.1 See Comparison
CP057428.1 See Comparison
NZ_OY839921.1 See Comparison
NZ_LR890470.1 See Comparison
CP057184.1 See Comparison
CP056652.1 See Comparison
NZ_LR890306.1 See Comparison
NZ_LR890341.1 See Comparison
NZ_LR890316.1 See Comparison
NZ_LR890409.1 See Comparison
CP098983.1 See Comparison
CP058045.1 See Comparison
CP058051.1 See Comparison
NZ_CP058062.1 See Comparison
NZ_CP057363.1 See Comparison
NZ_CP057482.1 See Comparison
NZ_CP057108.1 See Comparison
NZ_CP099363.1 See Comparison
CP099158.1 See Comparison
CP099165.1 See Comparison
NZ_CP116187.1 See Comparison
OW848849.1 See Comparison
NZ_OW968115.1 See Comparison
NZ_OY757131.1 See Comparison
OW848867.1 See Comparison
NZ_CP055035.1 See Comparison
NZ_CP081198.1 See Comparison
NZ_CP075661.1 See Comparison
NZ_OX030707.1 See Comparison
NZ_CP080132.1 See Comparison
NZ_CP069655.1 See Comparison
NZ_CP069681.1 See Comparison
NZ_CP069675.1 See Comparison
NZ_CP069691.1 See Comparison
NZ_OY757118.1 See Comparison
NZ_CP125153.1 See Comparison
NZ_OY754363.1 See Comparison
NZ_CP133459.1 See Comparison
NZ_CP115349.1 See Comparison
NZ_OX637967.1 See Comparison
NZ_CP123028.1 See Comparison
NZ_CP125106.1 See Comparison
CP057823.1 See Comparison
NZ_OY839921.1 See Comparison
CP057795.1 See Comparison
CP057704.1 See Comparison
CP057428.1 See Comparison
CP057184.1 See Comparison
CP056652.1 See Comparison
CP058006.1 See Comparison
NZ_CP055607.1 See Comparison
NZ_OW968115.1 See Comparison
NZ_LR890341.1 See Comparison
NZ_LR890409.1 See Comparison
NZ_CP057363.1 See Comparison
NZ_CP057482.1 See Comparison
NZ_CP057108.1 See Comparison
NZ_CP099363.1 See Comparison
NZ_OX030707.1 See Comparison
NZ_LR890306.1 See Comparison
NZ_LR890316.1 See Comparison
NZ_LR890470.1 See Comparison
CP058045.1 See Comparison
CP058051.1 See Comparison
NZ_CP058062.1 See Comparison
CP098983.1 See Comparison
CP099158.1 See Comparison
CP099165.1 See Comparison
NZ_CP116187.1 See Comparison
OW848849.1 See Comparison
NZ_CP080132.1 See Comparison
OW848867.1 See Comparison
NZ_CP055035.1 See Comparison
NZ_CP081198.1 See Comparison
NZ_OX637967.1 See Comparison
NZ_CP075661.1 See Comparison
NZ_CP069655.1 See Comparison
NZ_CP069681.1 See Comparison
NZ_CP069675.1 See Comparison
NZ_CP069691.1 See Comparison
NZ_OY757131.1 See Comparison
NZ_OY757118.1 See Comparison
NZ_OY754363.1 See Comparison
NZ_CP133459.1 See Comparison
NZ_CP115349.1 See Comparison
CP058006.1 See Comparison
NZ_CP123028.1 See Comparison
NZ_CP125153.1 See Comparison
NZ_CP125106.1 See Comparison
NZ_OY839921.1 See Comparison
CP057704.1 See Comparison
CP057428.1 See Comparison
NZ_CP055607.1 See Comparison
CP057184.1 See Comparison
CP057823.1 See Comparison
CP057795.1 See Comparison
NZ_LR890341.1 See Comparison
CP056652.1 See Comparison
NZ_LR890409.1 See Comparison
CP099158.1 See Comparison
NZ_LR890306.1 See Comparison
CP058045.1 See Comparison
CP058051.1 See Comparison
NZ_CP058062.1 See Comparison
NZ_CP057363.1 See Comparison
NZ_CP057482.1 See Comparison
NZ_CP057108.1 See Comparison
NZ_LR890316.1 See Comparison
NZ_LR890470.1 See Comparison
CP099165.1 See Comparison
NZ_CP116187.1 See Comparison
NZ_CP099363.1 See Comparison
CP098983.1 See Comparison
NZ_OX030707.1 See Comparison
OW848849.1 See Comparison
NZ_OW968115.1 See Comparison
NZ_CP080132.1 See Comparison
OW848867.1 See Comparison
NZ_CP055035.1 See Comparison
NZ_CP081198.1 See Comparison
NZ_OY757131.1 See Comparison
NZ_CP069655.1 See Comparison
NZ_CP069681.1 See Comparison
NZ_CP069675.1 See Comparison
NZ_CP069691.1 See Comparison
NZ_CP075661.1 See Comparison
NZ_OY754363.1 See Comparison
NZ_OY757118.1 See Comparison
NZ_CP133459.1 See Comparison
NZ_CP115349.1 See Comparison
NZ_OX637967.1 See Comparison
NZ_CP125153.1 See Comparison
NZ_CP123028.1 See Comparison
NZ_CP125106.1 See Comparison
NZ_OY839921.1 See Comparison
CP057428.1 See Comparison
CP058006.1 See Comparison
NZ_CP055607.1 See Comparison
CP057184.1 See Comparison
CP057823.1 See Comparison
CP057795.1 See Comparison
CP056652.1 See Comparison
CP057704.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore