Plasmid NZ_CP054362.1

Sequence

Nucleotide Information

Accession	NZ_CP054362.1
Description	Escherichia coli strain SCU-172 plasmid pSCU-172-9, complete sequence
Source	refseq
Topology	circular
Length	1552 bp
GC Content	0.52 %
Created at NCBI	June 12, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_013315695.1
Assembly Coverage	78

Biosample

Curated Collection Information

Accession	14943545

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	USA,California
Original Query Type	name
Coordinates (Lat/Lon)	36.70/-118.76
Address	USA,California

ECOSYSTEM

Original Query	Homo sapiens,whole organism,rectal swab from healthy college student
Classification	gastrointestinal_system,host_associated,rectal
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP057363.1	See Comparison
NZ_CP057482.1	See Comparison
NZ_CP057108.1	See Comparison
NZ_CP099363.1	See Comparison
CP098983.1	See Comparison
CP099158.1	See Comparison
CP099165.1	See Comparison
NZ_OX030707.1	See Comparison
NZ_OW968115.1	See Comparison
OW848867.1	See Comparison
OW848849.1	See Comparison
NZ_CP055035.1	See Comparison
NZ_CP081198.1	See Comparison
NZ_CP080132.1	See Comparison
NZ_OU342910.1	See Comparison
NZ_OU342904.1	See Comparison
NZ_CP075661.1	See Comparison
NZ_CP014317.1	See Comparison
NZ_CP011143.1	See Comparison
NC_022661.1	See Comparison
NZ_CP069655.1	See Comparison
NZ_CP069681.1	See Comparison
NZ_CP069675.1	See Comparison
NZ_CP069691.1	See Comparison
NZ_CP023858.1	See Comparison
NZ_OY757131.1	See Comparison
NZ_OY754363.1	See Comparison
NZ_OY757118.1	See Comparison
NZ_CP123028.1	See Comparison
NZ_CP115349.1	See Comparison
NZ_AP027211.1	See Comparison
NZ_CP133459.1	See Comparison
NZ_CP082066.1	See Comparison
NZ_OX637967.1	See Comparison
CP099165.1	See Comparison
NZ_CP125153.1	See Comparison
NZ_CP125106.1	See Comparison
NZ_CP139814.1	See Comparison
NZ_OY839921.1	See Comparison
CP058006.1	See Comparison
NZ_CP055607.1	See Comparison
CP057823.1	See Comparison
CP057795.1	See Comparison
CP057704.1	See Comparison
CP057428.1	See Comparison
CP057184.1	See Comparison
CP056652.1	See Comparison
NZ_LR890306.1	See Comparison
NZ_LR890409.1	See Comparison
NZ_CP057363.1	See Comparison
NZ_CP057482.1	See Comparison
NZ_CP057108.1	See Comparison
NZ_CP099363.1	See Comparison
CP098983.1	See Comparison
NZ_CP063524.1	See Comparison
NZ_CP069592.1	See Comparison
NZ_LR890316.1	See Comparison
NZ_LR890470.1	See Comparison
CP058045.1	See Comparison
CP058051.1	See Comparison
NZ_CP058062.1	See Comparison
NZ_CP055035.1	See Comparison
NZ_CP081198.1	See Comparison
NZ_CP069655.1	See Comparison
NZ_CP069681.1	See Comparison
NZ_CP069675.1	See Comparison
NZ_CP069691.1	See Comparison
NZ_CP011143.1	See Comparison
NC_022661.1	See Comparison
CP099158.1	See Comparison
NZ_OX030707.1	See Comparison
NZ_OW968115.1	See Comparison
OW848867.1	See Comparison
OW848849.1	See Comparison
NZ_CP080132.1	See Comparison
NZ_OU342910.1	See Comparison
NZ_OU342904.1	See Comparison
NZ_CP075661.1	See Comparison
NZ_CP014317.1	See Comparison
NZ_CP023858.1	See Comparison
NZ_CP125153.1	See Comparison
NZ_OY754363.1	See Comparison
NZ_CP133459.1	See Comparison
NZ_CP082066.1	See Comparison
NZ_OX637967.1	See Comparison
NZ_CP123028.1	See Comparison
NZ_OY757131.1	See Comparison
NZ_OY757118.1	See Comparison
NZ_CP115349.1	See Comparison
NZ_AP027211.1	See Comparison
NZ_CP125106.1	See Comparison
NZ_CP139814.1	See Comparison
NZ_OY839921.1	See Comparison
CP058006.1	See Comparison
CP057184.1	See Comparison
NZ_CP055607.1	See Comparison
CP057823.1	See Comparison
CP057795.1	See Comparison
CP057704.1	See Comparison
CP056652.1	See Comparison
CP057428.1	See Comparison
NZ_CP057363.1	See Comparison
NZ_LR890316.1	See Comparison
NZ_LR890470.1	See Comparison
NZ_LR890409.1	See Comparison
CP058045.1	See Comparison
CP058051.1	See Comparison
NZ_CP058062.1	See Comparison
NZ_CP063524.1	See Comparison
NZ_CP069592.1	See Comparison
NZ_LR890306.1	See Comparison
NZ_CP057482.1	See Comparison
NZ_CP081198.1	See Comparison
NZ_OX030707.1	See Comparison
NZ_OW968115.1	See Comparison
OW848867.1	See Comparison
OW848849.1	See Comparison
NZ_CP057108.1	See Comparison
NZ_CP099363.1	See Comparison
CP098983.1	See Comparison
CP099158.1	See Comparison
CP099165.1	See Comparison
NZ_CP055035.1	See Comparison
NZ_CP080132.1	See Comparison
NZ_OU342910.1	See Comparison
NZ_OU342904.1	See Comparison
NZ_CP075661.1	See Comparison
NZ_CP069655.1	See Comparison
NZ_CP069681.1	See Comparison
NZ_CP069675.1	See Comparison
NZ_CP069691.1	See Comparison
NZ_CP014317.1	See Comparison
NC_022661.1	See Comparison
NZ_CP011143.1	See Comparison
NZ_CP023858.1	See Comparison
NZ_CP123028.1	See Comparison
NZ_OY757131.1	See Comparison
NZ_OY757118.1	See Comparison
NZ_OY754363.1	See Comparison
NZ_CP133459.1	See Comparison
NZ_CP115349.1	See Comparison
NZ_CP082066.1	See Comparison
NZ_AP027211.1	See Comparison
NZ_OX637967.1	See Comparison
NZ_CP063524.1	See Comparison
NZ_CP125153.1	See Comparison
CP058006.1	See Comparison
NZ_CP055607.1	See Comparison
CP057823.1	See Comparison
CP057795.1	See Comparison
CP057704.1	See Comparison
CP057428.1	See Comparison
CP057184.1	See Comparison
NZ_CP054362.1	See Comparison
NZ_CP125106.1	See Comparison
NZ_CP139814.1	See Comparison
NZ_OY839921.1	See Comparison
CP056652.1	See Comparison
NZ_CP069592.1	See Comparison
NZ_LR890409.1	See Comparison
NZ_LR890306.1	See Comparison
NZ_LR890316.1	See Comparison
NZ_LR890470.1	See Comparison
NZ_OX030707.1	See Comparison
CP058045.1	See Comparison
CP058051.1	See Comparison
NZ_CP058062.1	See Comparison
CP099158.1	See Comparison
CP099165.1	See Comparison
NZ_CP057363.1	See Comparison
NZ_CP057482.1	See Comparison
NZ_CP057108.1	See Comparison
NZ_CP099363.1	See Comparison
CP098983.1	See Comparison
NZ_OW968115.1	See Comparison
NZ_CP014317.1	See Comparison
OW848867.1	See Comparison
OW848849.1	See Comparison
NZ_CP055035.1	See Comparison
NZ_CP081198.1	See Comparison
NZ_CP080132.1	See Comparison
NZ_OU342910.1	See Comparison
NZ_OU342904.1	See Comparison
NZ_CP075661.1	See Comparison
NZ_CP069675.1	See Comparison
NZ_CP069691.1	See Comparison
NZ_CP011143.1	See Comparison
NZ_OY757131.1	See Comparison
NC_022661.1	See Comparison
NZ_CP023858.1	See Comparison
NZ_CP069655.1	See Comparison
NZ_CP069681.1	See Comparison
NZ_OY757118.1	See Comparison
NZ_LR890470.1	See Comparison
NZ_CP082066.1	See Comparison
NZ_AP027211.1	See Comparison
NZ_CP123028.1	See Comparison
NZ_CP125153.1	See Comparison
NZ_OY839921.1	See Comparison
CP058006.1	See Comparison
CP056652.1	See Comparison
NZ_CP063524.1	See Comparison
NZ_CP069592.1	See Comparison
NZ_LR890306.1	See Comparison
NZ_OY754363.1	See Comparison
NZ_CP133459.1	See Comparison
NZ_CP115349.1	See Comparison
NZ_OX637967.1	See Comparison
NZ_CP125106.1	See Comparison
NZ_CP139814.1	See Comparison
NZ_CP055607.1	See Comparison
CP057823.1	See Comparison
CP057795.1	See Comparison
CP057704.1	See Comparison
CP057428.1	See Comparison
CP057184.1	See Comparison
NZ_LR890409.1	See Comparison
NZ_LR890316.1	See Comparison
CP058045.1	See Comparison
CP058051.1	See Comparison
NZ_CP058062.1	See Comparison
NZ_CP057363.1	See Comparison
NZ_CP057482.1	See Comparison
NZ_CP057108.1	See Comparison
NZ_CP099363.1	See Comparison
CP098983.1	See Comparison
CP099158.1	See Comparison
CP099165.1	See Comparison
OW848867.1	See Comparison
NZ_OX030707.1	See Comparison
NZ_OW968115.1	See Comparison
OW848849.1	See Comparison
NZ_CP081198.1	See Comparison
NZ_CP055035.1	See Comparison
NZ_CP080132.1	See Comparison
NZ_OU342910.1	See Comparison
NZ_OU342904.1	See Comparison
NC_022661.1	See Comparison
NZ_CP075661.1	See Comparison
NZ_CP069655.1	See Comparison
NZ_CP069681.1	See Comparison
NZ_CP069675.1	See Comparison
NZ_CP069691.1	See Comparison
NZ_CP014317.1	See Comparison
NZ_CP011143.1	See Comparison
NZ_OY757131.1	See Comparison
NZ_CP023858.1	See Comparison
NZ_OY757118.1	See Comparison
NZ_OX637967.1	See Comparison
NZ_CP082066.1	See Comparison
NZ_AP027211.1	See Comparison
NZ_OY754363.1	See Comparison
NZ_CP133459.1	See Comparison
NZ_CP115349.1	See Comparison
NZ_CP125106.1	See Comparison
NZ_CP123028.1	See Comparison
NZ_OY839921.1	See Comparison
NZ_CP139814.1	See Comparison
NZ_CP125153.1	See Comparison
NZ_OX030707.1	See Comparison
NZ_CP055607.1	See Comparison
CP057823.1	See Comparison
CP057795.1	See Comparison
CP057704.1	See Comparison
CP057428.1	See Comparison
CP057184.1	See Comparison
CP056652.1	See Comparison
NZ_LR890306.1	See Comparison
NZ_LR890316.1	See Comparison
CP058045.1	See Comparison
CP058051.1	See Comparison
NZ_CP058062.1	See Comparison
NZ_CP057363.1	See Comparison
NZ_CP057482.1	See Comparison
NZ_CP057108.1	See Comparison
NZ_CP099363.1	See Comparison
CP098983.1	See Comparison
CP099158.1	See Comparison
CP099165.1	See Comparison
CP058006.1	See Comparison
NZ_CP063524.1	See Comparison
NZ_CP069592.1	See Comparison
NZ_LR890470.1	See Comparison
NZ_LR890409.1	See Comparison
OW848867.1	See Comparison
NZ_OW968115.1	See Comparison
OW848849.1	See Comparison
NZ_CP081198.1	See Comparison
NZ_CP055035.1	See Comparison
NZ_CP075661.1	See Comparison
NZ_CP080132.1	See Comparison
NZ_OU342910.1	See Comparison
NZ_OU342904.1	See Comparison
NZ_CP014317.1	See Comparison
NZ_CP069655.1	See Comparison
NZ_CP069681.1	See Comparison
NZ_CP069675.1	See Comparison
NZ_CP069691.1	See Comparison
NZ_CP011143.1	See Comparison
NZ_CP139814.1	See Comparison
NC_022661.1	See Comparison
NZ_CP023858.1	See Comparison
NZ_OY757131.1	See Comparison
NZ_OY757118.1	See Comparison
NZ_CP082066.1	See Comparison
NZ_AP027211.1	See Comparison
NZ_CP123028.1	See Comparison
NZ_CP125153.1	See Comparison
NZ_CP125106.1	See Comparison
NZ_OY754363.1	See Comparison
NZ_CP133459.1	See Comparison
NZ_CP115349.1	See Comparison
NZ_OX637967.1	See Comparison
CP057823.1	See Comparison
NZ_OY839921.1	See Comparison
CP057795.1	See Comparison
CP057704.1	See Comparison
CP057428.1	See Comparison
CP057184.1	See Comparison
CP056652.1	See Comparison
CP058006.1	See Comparison
NZ_CP055607.1	See Comparison
NZ_CP063524.1	See Comparison
NZ_CP069592.1	See Comparison
NZ_LR890470.1	See Comparison
NZ_LR890409.1	See Comparison
CP058045.1	See Comparison
CP058051.1	See Comparison
NZ_CP058062.1	See Comparison
NZ_LR890306.1	See Comparison
NZ_LR890316.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore