Plasmid NZ_CP082066.1

Sequence

Nucleotide Information

Accession NZ_CP082066.1
Description Escherichia coli strain MS20674 plasmid pMS20674D, complete sequence
Source refseq
Topology circular
Length 1564 bp
GC Content 0.52 %
Created at NCBI July 23, 2023



Assembly

Genome Data Information

Accession GCF_030515255.1
Assembly Coverage 171


Biosample

Curated Collection Information
Accession 20934299

PLASMID INFORMATION
Genotype ST1193

GEOGRAPHICAL INFORMATION
Original Query Australia
Original Query Type name
Coordinates (Lat/Lon) -24.78/134.76
Address Australia

ECOSYSTEM
Original Query Homo sapiens,CSF
Classification host_associated,nervous_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Meningitis
DOID/SYMP
  • Meningitis (DOID:9471 )
    • A central nervous system disease that is characterized by an inflammation of the pia-arachnoid meninges. It can be caused by growth of bacteria, fungi, or parasites within the subarachnoid space or by the growth of bacteria or viruses within the meningeal or ependymal cells.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP054362.1 See Comparison
NZ_CP069592.1 See Comparison
NZ_LR890306.1 See Comparison
NZ_LR890316.1 See Comparison
NZ_LR890470.1 See Comparison
NZ_LR890409.1 See Comparison
CP058045.1 See Comparison
CP058051.1 See Comparison
NZ_CP057363.1 See Comparison
NZ_CP057482.1 See Comparison
NZ_CP057108.1 See Comparison
CP098983.1 See Comparison
CP099158.1 See Comparison
CP099165.1 See Comparison
NZ_OX030707.1 See Comparison
OW848849.1 See Comparison
NZ_CP123028.1 See Comparison
NZ_CP014317.1 See Comparison
NC_022661.1 See Comparison
NZ_CP023858.1 See Comparison
NZ_AP027211.1 See Comparison
NZ_OX637967.1 See Comparison
NZ_CP081198.1 See Comparison
NZ_CP069691.1 See Comparison
NZ_CP011143.1 See Comparison
CP058006.1 See Comparison
NZ_CP125153.1 See Comparison
NZ_CP125106.1 See Comparison
CP057704.1 See Comparison
NZ_CP055607.1 See Comparison
CP057823.1 See Comparison
CP057795.1 See Comparison
NZ_CP054362.1 See Comparison
CP056652.1 See Comparison
NZ_CP069592.1 See Comparison
NZ_LR890316.1 See Comparison
NZ_LR890409.1 See Comparison
NZ_LR890306.1 See Comparison
NZ_LR890470.1 See Comparison
CP058051.1 See Comparison
NZ_OX030707.1 See Comparison
CP058045.1 See Comparison
CP099158.1 See Comparison
CP099165.1 See Comparison
NZ_CP057363.1 See Comparison
NZ_CP057482.1 See Comparison
NZ_CP057108.1 See Comparison
CP098983.1 See Comparison
NC_022661.1 See Comparison
NZ_CP014317.1 See Comparison
OW848849.1 See Comparison
NZ_CP081198.1 See Comparison
NZ_CP069691.1 See Comparison
NZ_CP011143.1 See Comparison
NZ_CP023858.1 See Comparison
NZ_OX637967.1 See Comparison
NZ_AP027211.1 See Comparison
NZ_CP123028.1 See Comparison
CP058006.1 See Comparison
NZ_CP125153.1 See Comparison
NZ_CP125106.1 See Comparison
NZ_CP055607.1 See Comparison
CP057823.1 See Comparison
CP056652.1 See Comparison
CP057795.1 See Comparison
CP057704.1 See Comparison
NZ_CP054362.1 See Comparison
NZ_CP069592.1 See Comparison
NZ_LR890409.1 See Comparison
NZ_LR890306.1 See Comparison
CP099158.1 See Comparison
CP058045.1 See Comparison
CP058051.1 See Comparison
NZ_LR890316.1 See Comparison
NZ_LR890470.1 See Comparison
NZ_CP057363.1 See Comparison
CP099165.1 See Comparison
OW848849.1 See Comparison
NZ_CP057482.1 See Comparison
NZ_CP057108.1 See Comparison
CP098983.1 See Comparison
NZ_OX030707.1 See Comparison
NZ_CP081198.1 See Comparison
NZ_CP069691.1 See Comparison
NZ_CP123028.1 See Comparison
NZ_CP011143.1 See Comparison
NC_022661.1 See Comparison
NZ_CP023858.1 See Comparison
NZ_OX637967.1 See Comparison
NZ_CP014317.1 See Comparison
NZ_AP027211.1 See Comparison
NZ_CP014317.1 See Comparison
NZ_CP125153.1 See Comparison
NZ_CP125106.1 See Comparison
CP056652.1 See Comparison
NZ_LR890306.1 See Comparison
NZ_LR890409.1 See Comparison
CP058045.1 See Comparison
CP058051.1 See Comparison
CP099165.1 See Comparison
OW848849.1 See Comparison
NZ_CP081198.1 See Comparison
NZ_CP069691.1 See Comparison
CP058006.1 See Comparison
NZ_CP055607.1 See Comparison
CP057823.1 See Comparison
CP057795.1 See Comparison
CP057704.1 See Comparison
NZ_CP054362.1 See Comparison
NZ_CP069592.1 See Comparison
NZ_LR890316.1 See Comparison
NZ_LR890470.1 See Comparison
NZ_CP057363.1 See Comparison
NZ_CP057482.1 See Comparison
NZ_CP057108.1 See Comparison
CP098983.1 See Comparison
CP099158.1 See Comparison
NZ_OX030707.1 See Comparison
NZ_CP123028.1 See Comparison
NZ_CP011143.1 See Comparison
NC_022661.1 See Comparison
NZ_CP023858.1 See Comparison
NZ_AP027211.1 See Comparison
NZ_OX637967.1 See Comparison
CP058006.1 See Comparison
NZ_CP125153.1 See Comparison
NZ_CP125106.1 See Comparison
NZ_CP055607.1 See Comparison
CP057823.1 See Comparison
CP057795.1 See Comparison
CP057704.1 See Comparison
NZ_CP054362.1 See Comparison
CP056652.1 See Comparison
NZ_CP069592.1 See Comparison
NZ_LR890316.1 See Comparison
NZ_LR890470.1 See Comparison
NZ_LR890306.1 See Comparison
NZ_LR890409.1 See Comparison
NZ_CP057363.1 See Comparison
CP058045.1 See Comparison
CP058051.1 See Comparison
NZ_CP057108.1 See Comparison
NZ_CP057482.1 See Comparison
NZ_OX030707.1 See Comparison
CP098983.1 See Comparison
CP099158.1 See Comparison
CP099165.1 See Comparison
NZ_CP069691.1 See Comparison
OW848849.1 See Comparison
NZ_CP081198.1 See Comparison
NZ_AP027211.1 See Comparison
NZ_CP011143.1 See Comparison
NC_022661.1 See Comparison
NZ_CP023858.1 See Comparison
NZ_CP014317.1 See Comparison
NZ_CP125106.1 See Comparison
NZ_CP123028.1 See Comparison
NZ_OX637967.1 See Comparison
CP056652.1 See Comparison
NZ_CP125153.1 See Comparison
CP058006.1 See Comparison
NZ_CP055607.1 See Comparison
CP057823.1 See Comparison
CP057795.1 See Comparison
CP057704.1 See Comparison
NZ_LR890306.1 See Comparison
NZ_CP054362.1 See Comparison
NZ_CP069592.1 See Comparison
NZ_LR890316.1 See Comparison
CP058045.1 See Comparison
NZ_LR890470.1 See Comparison
NZ_LR890409.1 See Comparison
CP058051.1 See Comparison
NZ_OX030707.1 See Comparison
NZ_CP057363.1 See Comparison
NZ_CP057482.1 See Comparison
NZ_CP057108.1 See Comparison
CP098983.1 See Comparison
CP099158.1 See Comparison
CP099165.1 See Comparison
NZ_CP081198.1 See Comparison
OW848849.1 See Comparison
NZ_CP011143.1 See Comparison
NZ_CP069691.1 See Comparison
NZ_CP014317.1 See Comparison
NC_022661.1 See Comparison
NZ_AP027211.1 See Comparison
NZ_CP023858.1 See Comparison
NZ_CP082066.1 See Comparison
NZ_OX637967.1 See Comparison
CP056652.1 See Comparison
NZ_CP123028.1 See Comparison
NZ_CP125106.1 See Comparison
CP058006.1 See Comparison
NZ_CP055607.1 See Comparison
CP057823.1 See Comparison
CP057795.1 See Comparison
NZ_CP125153.1 See Comparison
NZ_CP069592.1 See Comparison
CP057704.1 See Comparison
NZ_CP054362.1 See Comparison
NZ_LR890306.1 See Comparison
NZ_LR890409.1 See Comparison
NZ_LR890316.1 See Comparison
NZ_CP057363.1 See Comparison
NZ_LR890470.1 See Comparison
CP058045.1 See Comparison
CP058051.1 See Comparison
NZ_CP057482.1 See Comparison
NZ_CP057108.1 See Comparison
CP098983.1 See Comparison
CP099158.1 See Comparison
CP099165.1 See Comparison
NZ_CP069691.1 See Comparison
NZ_OX030707.1 See Comparison
OW848849.1 See Comparison
NZ_CP081198.1 See Comparison
NZ_CP011143.1 See Comparison
NZ_CP014317.1 See Comparison
NC_022661.1 See Comparison
NZ_CP123028.1 See Comparison
NZ_CP023858.1 See Comparison
NZ_AP027211.1 See Comparison
NZ_OX637967.1 See Comparison
NZ_CP125153.1 See Comparison
CP058006.1 See Comparison
NZ_CP125106.1 See Comparison
CP057823.1 See Comparison
CP057795.1 See Comparison
NZ_CP055607.1 See Comparison
CP057704.1 See Comparison
CP056652.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2