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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP055035.1
Sequence
Nucleotide Information
Accession
NZ_CP055035.1
Description
Klebsiella pneumoniae strain SWHEFF_62 plasmid unnamed2, complete sequence
Source
refseq
Topology
circular
Length
1552 bp
GC Content
0.52 %
Created at NCBI
Feb. 24, 2022
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Klebsiella pneumoniae (573)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Klebsiella (570)
Species
Klebsiella_pneumoniae (573)
Strain
Assembly
Genome Data Information
Accession
GCF_022353985.1
Assembly Coverage
200
Biosample
Curated Collection Information
Accession
13925588
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
22.5N;114.1E
Original Query Type
coordinates
Coordinates (Lat/Lon)
22.50/114.10
Address
15, Geneva South Avenue, Valais, Kwu Tung Tin Sum, Kam Tsin, North District, New Territories, Hong Kong, 518032, China
ECOSYSTEM
Original Query
Shek Wu Hui WWTPs_62 WWTPs effluent
Classification
wastewater,wwtp
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
Collapse all
Expand all
Plasmids from same Biosample
NZ_CP055036.1
NZ_CP055034.1
Similar Plasmids
based on Mash distance
NZ_LR890306.1
See Comparison
NZ_LR890316.1
See Comparison
NZ_LR890470.1
See Comparison
NZ_LR890341.1
See Comparison
NZ_LR890409.1
See Comparison
CP063735.1
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NZ_CP060428.1
See Comparison
CP058045.1
See Comparison
CP058051.1
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NZ_CP058062.1
See Comparison
NZ_CP057363.1
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NZ_CP057482.1
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NZ_CP057108.1
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NZ_CP099363.1
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CP098983.1
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CP098995.1
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CP099158.1
See Comparison
CP099165.1
See Comparison
NZ_CP116151.1
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NZ_CP116187.1
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NZ_OX030707.1
See Comparison
NZ_OW968115.1
See Comparison
OW848867.1
See Comparison
OW848849.1
See Comparison
NZ_CP060961.1
See Comparison
NZ_OU342910.1
See Comparison
NZ_CP075661.1
See Comparison
NZ_CP081198.1
See Comparison
NZ_CP080132.1
See Comparison
NZ_OU342904.1
See Comparison
NZ_CP047018.1
See Comparison
NZ_CP011143.1
See Comparison
NZ_CP069655.1
See Comparison
NZ_CP069681.1
See Comparison
NZ_CP069675.1
See Comparison
NZ_CP069691.1
See Comparison
NZ_CP014317.1
See Comparison
NC_022661.1
See Comparison
NZ_CP045286.1
See Comparison
NZ_CP026493.1
See Comparison
NZ_CP023858.1
See Comparison
NZ_CP115349.1
See Comparison
NZ_OY754363.1
See Comparison
NZ_OY757131.1
See Comparison
NZ_OY757118.1
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NZ_CP123028.1
See Comparison
NZ_CP133459.1
See Comparison
NZ_AP027211.1
See Comparison
NZ_OX637967.1
See Comparison
CP058006.1
See Comparison
NZ_OY839921.1
See Comparison
NZ_CP125153.1
See Comparison
NZ_CP125106.1
See Comparison
NZ_CP055607.1
See Comparison
CP057823.1
See Comparison
CP057795.1
See Comparison
CP057704.1
See Comparison
CP057184.1
See Comparison
CP057428.1
See Comparison
CP056984.1
See Comparison
NZ_CP054362.1
See Comparison
CP056652.1
See Comparison
NZ_CP069592.1
See Comparison
NZ_CP063524.1
See Comparison
NZ_LR890316.1
See Comparison
NZ_LR890306.1
See Comparison
NZ_LR890470.1
See Comparison
NZ_LR890341.1
See Comparison
NZ_LR890409.1
See Comparison
NZ_CP057363.1
See Comparison
NZ_CP060428.1
See Comparison
CP058045.1
See Comparison
CP058051.1
See Comparison
NZ_CP058062.1
See Comparison
CP063735.1
See Comparison
NZ_CP057108.1
See Comparison
NZ_CP099363.1
See Comparison
CP098983.1
See Comparison
CP098995.1
See Comparison
NZ_CP057482.1
See Comparison
CP099158.1
See Comparison
CP099165.1
See Comparison
NZ_CP116151.1
See Comparison
NZ_CP116187.1
See Comparison
OW848867.1
See Comparison
NZ_OX030707.1
See Comparison
NZ_OW968115.1
See Comparison
OW848849.1
See Comparison
NZ_OU342910.1
See Comparison
NZ_CP075661.1
See Comparison
NZ_CP060961.1
See Comparison
NZ_CP081198.1
See Comparison
NZ_CP080132.1
See Comparison
NZ_OU342904.1
See Comparison
NZ_CP047018.1
See Comparison
NZ_CP011143.1
See Comparison
NZ_CP069655.1
See Comparison
NZ_CP069681.1
See Comparison
NZ_CP069675.1
See Comparison
NZ_CP069691.1
See Comparison
NZ_CP014317.1
See Comparison
NC_022661.1
See Comparison
NZ_OY757131.1
See Comparison
NZ_CP026493.1
See Comparison
NZ_CP045286.1
See Comparison
NZ_CP023858.1
See Comparison
NZ_OY757118.1
See Comparison
NZ_AP027211.1
See Comparison
NZ_OY754363.1
See Comparison
NZ_CP133459.1
See Comparison
NZ_CP115349.1
See Comparison
NZ_OX637967.1
See Comparison
CP056984.1
See Comparison
NZ_CP125153.1
See Comparison
NZ_OY839921.1
See Comparison
CP058006.1
See Comparison
NZ_CP055607.1
See Comparison
CP057823.1
See Comparison
CP057795.1
See Comparison
CP057704.1
See Comparison
NZ_CP123028.1
See Comparison
NZ_CP125106.1
See Comparison
CP056652.1
See Comparison
CP057428.1
See Comparison
CP057184.1
See Comparison
NZ_LR890341.1
See Comparison
NZ_CP054362.1
See Comparison
NZ_CP063524.1
See Comparison
NZ_CP069592.1
See Comparison
NZ_LR890409.1
See Comparison
NZ_LR890316.1
See Comparison
CP063735.1
See Comparison
NZ_LR890470.1
See Comparison
NZ_LR890306.1
See Comparison
NZ_CP116187.1
See Comparison
NZ_CP057363.1
See Comparison
NZ_CP057482.1
See Comparison
NZ_CP057108.1
See Comparison
NZ_CP099363.1
See Comparison
CP098983.1
See Comparison
NZ_CP060428.1
See Comparison
CP058045.1
See Comparison
CP058051.1
See Comparison
NZ_CP058062.1
See Comparison
CP098995.1
See Comparison
CP099158.1
See Comparison
CP099165.1
See Comparison
NZ_OX030707.1
See Comparison
NZ_CP116151.1
See Comparison
NZ_OW968115.1
See Comparison
NZ_CP081198.1
See Comparison
OW848867.1
See Comparison
OW848849.1
See Comparison
NZ_CP060961.1
See Comparison
NZ_CP055035.1
See Comparison
NZ_CP080132.1
See Comparison
NZ_CP047018.1
See Comparison
NZ_CP075661.1
See Comparison
NZ_OU342910.1
See Comparison
NZ_OU342904.1
See Comparison
NZ_CP069655.1
See Comparison
NZ_CP069675.1
See Comparison
NZ_CP069691.1
See Comparison
NZ_CP069681.1
See Comparison
NZ_CP011143.1
See Comparison
NZ_CP014317.1
See Comparison
NC_022661.1
See Comparison
NZ_CP125106.1
See Comparison
NZ_CP045286.1
See Comparison
NZ_CP026493.1
See Comparison
NZ_OY754363.1
See Comparison
NZ_CP133459.1
See Comparison
NZ_CP115349.1
See Comparison
NZ_AP027211.1
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NZ_OX637967.1
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NZ_CP125153.1
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NZ_CP023858.1
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NZ_OY757131.1
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NZ_OY757118.1
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NZ_CP123028.1
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CP056652.1
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NZ_OY839921.1
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NZ_CP055607.1
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CP057823.1
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CP057795.1
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CP057704.1
See Comparison
NZ_CP069592.1
See Comparison
CP057428.1
See Comparison
CP057184.1
See Comparison
CP056984.1
See Comparison
NZ_CP054362.1
See Comparison
NZ_CP063524.1
See Comparison
CP058006.1
See Comparison
NZ_LR890306.1
See Comparison
NZ_LR890316.1
See Comparison
NZ_LR890470.1
See Comparison
NZ_CP060428.1
See Comparison
NZ_LR890341.1
See Comparison
NZ_LR890409.1
See Comparison
CP063735.1
See Comparison
CP058045.1
See Comparison
CP058051.1
See Comparison
NZ_CP058062.1
See Comparison
NZ_CP060961.1
See Comparison
NZ_CP057363.1
See Comparison
NZ_CP057482.1
See Comparison
NZ_CP057108.1
See Comparison
NZ_OX030707.1
See Comparison
NZ_OW968115.1
See Comparison
OW848849.1
See Comparison
NZ_CP099363.1
See Comparison
CP098983.1
See Comparison
CP098995.1
See Comparison
CP099158.1
See Comparison
CP099165.1
See Comparison
NZ_CP116151.1
See Comparison
NZ_CP116187.1
See Comparison
OW848867.1
See Comparison
NZ_OU342910.1
See Comparison
NZ_CP081198.1
See Comparison
NZ_CP080132.1
See Comparison
NZ_OU342904.1
See Comparison
NZ_CP047018.1
See Comparison
NZ_CP075661.1
See Comparison
NZ_CP069655.1
See Comparison
NZ_CP069681.1
See Comparison
NZ_CP069675.1
See Comparison
NZ_CP069691.1
See Comparison
NZ_CP011143.1
See Comparison
NZ_CP014317.1
See Comparison
NC_022661.1
See Comparison
NZ_CP045286.1
See Comparison
NZ_CP023858.1
See Comparison
NZ_CP123028.1
See Comparison
NZ_CP026493.1
See Comparison
NZ_OY754363.1
See Comparison
NZ_CP133459.1
See Comparison
NZ_CP115349.1
See Comparison
NZ_AP027211.1
See Comparison
NZ_OX637967.1
See Comparison
NZ_OY757131.1
See Comparison
NZ_OY757118.1
See Comparison
CP058006.1
See Comparison
NZ_CP125106.1
See Comparison
NZ_CP125153.1
See Comparison
NZ_OY839921.1
See Comparison
NZ_CP055607.1
See Comparison
CP057823.1
See Comparison
CP057795.1
See Comparison
NZ_CP069592.1
See Comparison
CP057704.1
See Comparison
CP057428.1
See Comparison
CP057184.1
See Comparison
CP056984.1
See Comparison
CP056652.1
See Comparison
NZ_CP054362.1
See Comparison
NZ_CP063524.1
See Comparison
NZ_LR890306.1
See Comparison
NZ_LR890316.1
See Comparison
NZ_LR890470.1
See Comparison
NZ_LR890341.1
See Comparison
NZ_CP060428.1
See Comparison
NZ_LR890409.1
See Comparison
CP063735.1
See Comparison
CP058045.1
See Comparison
CP058051.1
See Comparison
NZ_CP058062.1
See Comparison
NZ_CP057363.1
See Comparison
NZ_CP057482.1
See Comparison
NZ_CP057108.1
See Comparison
NZ_CP099363.1
See Comparison
CP098983.1
See Comparison
CP098995.1
See Comparison
CP099158.1
See Comparison
CP099165.1
See Comparison
NZ_OX030707.1
See Comparison
NZ_CP116151.1
See Comparison
NZ_CP116187.1
See Comparison
NZ_OW968115.1
See Comparison
NZ_CP060961.1
See Comparison
OW848867.1
See Comparison
OW848849.1
See Comparison
NZ_OU342910.1
See Comparison
NZ_CP081198.1
See Comparison
NZ_CP080132.1
See Comparison
NZ_OU342904.1
See Comparison
NZ_CP047018.1
See Comparison
NZ_CP075661.1
See Comparison
NZ_CP069655.1
See Comparison
NZ_CP069681.1
See Comparison
NZ_CP069675.1
See Comparison
NZ_CP069691.1
See Comparison
NZ_CP125106.1
See Comparison
NZ_CP014317.1
See Comparison
NC_022661.1
See Comparison
NZ_CP045286.1
See Comparison
NZ_CP023858.1
See Comparison
NZ_CP026493.1
See Comparison
NZ_OY754363.1
See Comparison
NZ_CP133459.1
See Comparison
NZ_CP115349.1
See Comparison
NZ_AP027211.1
See Comparison
NZ_OX637967.1
See Comparison
NZ_CP011143.1
See Comparison
NZ_OY757131.1
See Comparison
NZ_OY757118.1
See Comparison
NZ_CP123028.1
See Comparison
NZ_OY839921.1
See Comparison
NZ_CP125153.1
See Comparison
CP057823.1
See Comparison
CP057795.1
See Comparison
CP057704.1
See Comparison
CP057428.1
See Comparison
CP057184.1
See Comparison
CP058006.1
See Comparison
CP056984.1
See Comparison
NZ_CP055607.1
See Comparison
CP056652.1
See Comparison
CP098983.1
See Comparison
NZ_CP054362.1
See Comparison
NZ_CP069592.1
See Comparison
NZ_LR890306.1
See Comparison
NZ_LR890316.1
See Comparison
NZ_LR890470.1
See Comparison
NZ_CP060428.1
See Comparison
CP058045.1
See Comparison
CP058051.1
See Comparison
NZ_CP058062.1
See Comparison
NZ_CP063524.1
See Comparison
NZ_LR890341.1
See Comparison
NZ_LR890409.1
See Comparison
CP063735.1
See Comparison
NZ_CP057363.1
See Comparison
NZ_CP057482.1
See Comparison
NZ_CP057108.1
See Comparison
CP098995.1
See Comparison
CP099158.1
See Comparison
CP099165.1
See Comparison
NZ_CP116151.1
See Comparison
NZ_CP099363.1
See Comparison
NZ_CP116187.1
See Comparison
OW848867.1
See Comparison
OW848849.1
See Comparison
NZ_OX030707.1
See Comparison
NZ_OW968115.1
See Comparison
NZ_OU342904.1
See Comparison
NZ_CP081198.1
See Comparison
NZ_CP080132.1
See Comparison
NZ_CP060961.1
See Comparison
NZ_CP047018.1
See Comparison
NZ_OU342910.1
See Comparison
NZ_CP075661.1
See Comparison
NZ_CP069655.1
See Comparison
NZ_CP069681.1
See Comparison
NZ_CP069675.1
See Comparison
NZ_CP069691.1
See Comparison
NZ_CP014317.1
See Comparison
NZ_OY757131.1
See Comparison
NZ_CP011143.1
See Comparison
NZ_CP045286.1
See Comparison
NZ_CP023858.1
See Comparison
NZ_CP026493.1
See Comparison
NC_022661.1
See Comparison
NZ_OY757118.1
See Comparison
NZ_CP125153.1
See Comparison
NZ_CP123028.1
See Comparison
NZ_OY754363.1
See Comparison
NZ_CP133459.1
See Comparison
NZ_CP115349.1
See Comparison
NZ_AP027211.1
See Comparison
NZ_OX637967.1
See Comparison
NZ_OY839921.1
See Comparison
NZ_CP125106.1
See Comparison
CP057704.1
See Comparison
CP056984.1
See Comparison
CP058006.1
See Comparison
NZ_CP055607.1
See Comparison
CP057428.1
See Comparison
CP057823.1
See Comparison
CP057795.1
See Comparison
CP056652.1
See Comparison
CP057184.1
See Comparison
NZ_CP063524.1
See Comparison
NZ_CP054362.1
See Comparison
NZ_CP069592.1
See Comparison
Identical Plasmids
100% Sequence Identity
NZ_CP080132.1
Sequence
Accession
:
NZ_CP080132.1
Description
: Escherichia coli strain PK8568 plasmid pPK8568-1kb, complete sequence
Source
: refseq
Created at NCBI
: Aug. 2, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
20348874
GEOGRAPHICAL INFORMATION
Original Query
: 31.41N;73.11E
Original Query Type
: coordinates
Address
: Faisalabad City Tehsil, Faisalabad District, Punjab, 38000, Pakistan
Coordinates
(Lat/Lon): 31.41/73.11
ECOSYSTEM
Original Query
: chicken
Classification
: host_associated
Host-associated Taxon
:
Gallus gallus (
9031
)
Visualization
PNG
JSON
NZ_CP075661.1
Sequence
Accession
:
NZ_CP075661.1
Description
: Escherichia coli strain STEC17-183 plasmid pSTEC17_183-i
Source
: refseq
Created at NCBI
: May 24, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
16993368
GEOGRAPHICAL INFORMATION
Original Query
: 47.40N;8.55E
Original Query Type
: coordinates
Address
: Universitäres Tierspital, 260, Winterthurerstrasse, Oerlikon, Kreis 11, Zurich, District Zurich, Zurich, 8057, Switzerland
Coordinates
(Lat/Lon): 47.40/8.55
ECOSYSTEM
Original Query
: Homo sapiens,stool
Classification
: fecal,gastrointestinal_system,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: gastrointestinal illnes
DOID/SYMP
:
Gastrointestinal system disease
(
DOID:77
)
A disease of anatomical entity that is located_in the gastrointestinal tract.
Visualization
PNG
JSON
NZ_CP069681.1
Sequence
Accession
:
NZ_CP069681.1
Description
: Escherichia coli O126:H45 strain MIN10 plasmid pMUB-MIN10-3, complete sequence
Source
: refseq
Created at NCBI
: March 26, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (2810407)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
17831483
GEOGRAPHICAL INFORMATION
Original Query
: 53.12523570N;23.15905989E
Original Query Type
: coordinates
Address
: Uniwersytecki Szpital Kliniczny, 24A, Marii Skłodowskiej-Curie, Osiedle Skłodowskiej, Piaski, Białystok, Podlaskie Voivodeship, 15-276, Poland
Coordinates
(Lat/Lon): 53.13/23.16
ECOSYSTEM
Original Query
: Homo sapiens
Classification
: host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP069655.1
Sequence
Accession
:
NZ_CP069655.1
Description
: Escherichia coli O7:H4 strain MIN14 plasmid pMUB-MIN14-8, complete sequence
Source
: refseq
Created at NCBI
: March 26, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (2810404)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
17831486
GEOGRAPHICAL INFORMATION
Original Query
: 53.12523570N;23.15905989E
Original Query Type
: coordinates
Address
: Uniwersytecki Szpital Kliniczny, 24A, Marii Skłodowskiej-Curie, Osiedle Skłodowskiej, Piaski, Białystok, Podlaskie Voivodeship, 15-276, Poland
Coordinates
(Lat/Lon): 53.13/23.16
ECOSYSTEM
Original Query
: Homo sapiens
Classification
: host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP069675.1
Sequence
Accession
:
NZ_CP069675.1
Description
: Escherichia coli O89m:H9 strain MIN11 plasmid pMUB-MIN11-8, complete sequence
Source
: refseq
Created at NCBI
: March 26, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (2810406)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
17831484
GEOGRAPHICAL INFORMATION
Original Query
: 53.12523570N;23.15905989E
Original Query Type
: coordinates
Address
: Uniwersytecki Szpital Kliniczny, 24A, Marii Skłodowskiej-Curie, Osiedle Skłodowskiej, Piaski, Białystok, Podlaskie Voivodeship, 15-276, Poland
Coordinates
(Lat/Lon): 53.13/23.16
ECOSYSTEM
Original Query
: Homo sapiens
Classification
: host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_OY754363.1
Sequence
Accession
:
NZ_OY754363.1
Description
: Escherichia coli isolate F1022 plasmid pF1022-6, complete sequence
Source
: refseq
Created at NCBI
: Oct. 27, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
35792124
GEOGRAPHICAL INFORMATION
Original Query
: France
Original Query Type
: name
Address
: France
Coordinates
(Lat/Lon): 46.60/1.89
ECOSYSTEM
Original Query
: hen
Classification
: host_associated
Host-associated Taxon
:
Gallus gallus (
9031
)
Visualization
PNG
JSON
NZ_CP133459.1
Sequence
Accession
:
NZ_CP133459.1
Description
: Escherichia coli strain CREC8 plasmid p7
Source
: refseq
Created at NCBI
: Sept. 8, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
37004833
GEOGRAPHICAL INFORMATION
Original Query
: China,Hangzhou
Original Query Type
: name
Address
: China,Hangzhou
Coordinates
(Lat/Lon): 30.25/120.21
ECOSYSTEM
Original Query
: Homo sapiens,human feces,feces
Classification
: fecal,gastrointestinal_system,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP115349.1
Sequence
Accession
:
NZ_CP115349.1
Description
: Escherichia coli strain CUVET21-H2 plasmid pCUVET21-H2.6, complete sequence
Source
: refseq
Created at NCBI
: Sept. 3, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
32339847
GEOGRAPHICAL INFORMATION
Original Query
: Thailand,Bangkok
Original Query Type
: name
Address
: Thailand,Bangkok
Coordinates
(Lat/Lon): 13.75/100.49
ECOSYSTEM
Original Query
: dog,pure culture,blood
Classification
: blood,cell_culture,circulatory_system,host_associated
Host-associated Taxon
:
Canis lupus (
9615
)
Visualization
PNG
JSON
NZ_CP099363.1
Sequence
Accession
:
NZ_CP099363.1
Description
: Escherichia fergusonii strain RHB02-E1-C03 plasmid unnamed5, complete sequence
Source
: refseq
Created at NCBI
: April 15, 2023
Host Taxonomy
Assigned Host
:
Escherichia fergusonii (564)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_fergusonii (564)
Strain
:
Biosample
Accession
:
15488482
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: culture,Pooled sediment sample collected from floor of pig farm
Classification
: anthropogenic,cell_culture,farm,sediment
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_OW968115.1
Sequence
Accession
:
NZ_OW968115.1
Description
: Escherichia coli isolate 602 plasmid P4, complete sequence
Source
: refseq
Created at NCBI
: May 20, 2022
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
22316794
GEOGRAPHICAL INFORMATION
Original Query
: Spain
Original Query Type
: name
Address
: Spain
Coordinates
(Lat/Lon): 39.33/-4.84
ECOSYSTEM
Original Query
: Homo sapiens,Hospital Universitario La Paz (Madrid)
Classification
: anthropogenic,hospital,host_associated,location
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: diseased
DOID/SYMP
:
Disease
(
DOID:4
)
A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
Visualization
PNG
JSON
NZ_CP058062.1
Sequence
Accession
:
NZ_CP058062.1
Description
: Escherichia fergusonii strain RHB02-C22 plasmid pRHB02-C22_6, complete sequence
Source
: refseq
Created at NCBI
: Aug. 6, 2020
Host Taxonomy
Assigned Host
:
Escherichia fergusonii (564)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_fergusonii (564)
Strain
:
Biosample
Accession
:
15147971
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: culture,Pooled pig faecal samples collected from floor of farm
Classification
: cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
:
Sus scrofa (
9823
)
Visualization
PNG
JSON
NZ_OY839921.1
Sequence
Accession
:
NZ_OY839921.1
Description
: Escherichia coli isolate F339 plasmid pF339-3, complete sequence
Source
: refseq
Created at NCBI
: Dec. 3, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
35792066
GEOGRAPHICAL INFORMATION
Original Query
: France
Original Query Type
: name
Address
: France
Coordinates
(Lat/Lon): 46.60/1.89
ECOSYSTEM
Original Query
: hen
Classification
: host_associated
Host-associated Taxon
:
Gallus gallus (
9031
)
Visualization
PNG
JSON
NZ_OY757131.1
Sequence
Accession
:
NZ_OY757131.1
Description
: Escherichia coli isolate S84 plasmid pS84-5, complete sequence
Source
: refseq
Created at NCBI
: Nov. 3, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
35792063
GEOGRAPHICAL INFORMATION
Original Query
: France
Original Query Type
: name
Address
: France
Coordinates
(Lat/Lon): 46.60/1.89
ECOSYSTEM
Original Query
: None
Classification
: None
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_OY757118.1
Sequence
Accession
:
NZ_OY757118.1
Description
: Escherichia coli isolate S30 plasmid pS30-5, complete sequence
Source
: refseq
Created at NCBI
: Nov. 3, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
OW848867.1
Sequence
Accession
:
OW848867.1
Description
: Klebsiella pneumoniae isolate 405 genome assembly, plasmid: P5
Source
: insd
Created at NCBI
: May 14, 2022
Host Taxonomy
Assigned Host
:
Klebsiella pneumoniae (573)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Klebsiella (570)
Species
:
Klebsiella_pneumoniae (573)
Strain
:
Biosample
Accession
:
22316572
GEOGRAPHICAL INFORMATION
Original Query
: Spain
Original Query Type
: name
Address
: Spain
Coordinates
(Lat/Lon): 39.33/-4.84
ECOSYSTEM
Original Query
: Homo sapiens,Hospital Universitario Gregorio Maranon (Madrid)
Classification
: host_associated,location
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: diseased
DOID/SYMP
:
Disease
(
DOID:4
)
A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
Visualization
PNG
JSON
CP057428.1
Sequence
Accession
:
CP057428.1
Description
: Escherichia coli strain RHB27-C09 plasmid pRHB27-C09_6, complete sequence
Source
: insd
Created at NCBI
: July 28, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
15148259
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: culture,Pooled pig faecal samples collected from floor of farm
Classification
: cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
:
Sus scrofa (
9823
)
Visualization
PNG
JSON
CP057184.1
Sequence
Accession
:
CP057184.1
Description
: Escherichia coli strain RHB34-C04 plasmid pRHB34-C04_7, complete sequence
Source
: insd
Created at NCBI
: July 28, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
15148337
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: culture,Pooled pig faecal samples collected from floor of farm
Classification
: cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
:
Sus scrofa (
9823
)
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore