Plasmid NZ_CP050367.1

Sequence

Nucleotide Information

Accession	NZ_CP050367.1
Description	Klebsiella pneumoniae strain 47733 plasmid p47733_NDM_5, complete sequence
Source	refseq
Topology	circular
Length	103085 bp
GC Content	0.52 %
Created at NCBI	April 1, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Klebsiella pneumoniae (573)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Klebsiella (570)
Species	Klebsiella_pneumoniae (573)
Strain

Assembly

Genome Data Information

Accession	GCF_011769725.1
Assembly Coverage	500

Biosample

Curated Collection Information

Accession	14421539

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	50.08N;14.36E
Original Query Type	coordinates
Coordinates (Lat/Lon)	50.08/14.36
Address	1152/66, Tomanova, Břevnov, Prague, obvod Praha 6, Prague, 169 00, Czechia

ECOSYSTEM

Original Query	Homo sapiens,Rectal swab
Classification	gastrointestinal_system,host_associated,rectal
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	concussion
DOID/SYMP	Traumatic brain injury (DOID:0081292 ) A brain disease that is characterized by brain dysfunction caused by an outside force, usually a violent blow to the head.

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP024836.1	See Comparison
NZ_CP024840.1	See Comparison
NZ_CP095681.1	See Comparison
NZ_CP095683.1	See Comparison
NZ_CP127509.1	See Comparison
NZ_CP127512.1	See Comparison
NZ_KY130431.1	See Comparison
NZ_CP053768.1	See Comparison
NZ_AP023236.1	See Comparison
NZ_KT725788.1	See Comparison
LC744515.1	See Comparison
NZ_AP023454.1	See Comparison
NZ_CP054171.1	See Comparison
LC744512.1	See Comparison
LC744498.1	See Comparison
LC744497.1	See Comparison
NZ_AP018144.1	See Comparison
LC744443.1	See Comparison
LC744440.1	See Comparison
LC744491.1	See Comparison
LC744488.1	See Comparison
NZ_CP095669.1	See Comparison
LC744487.1	See Comparison
LC744480.1	See Comparison
LC744475.1	See Comparison
LC744473.1	See Comparison
LC744470.1	See Comparison
LC744467.1	See Comparison
LC744465.1	See Comparison
LC744449.1	See Comparison
NZ_AP023434.1	See Comparison
NZ_CP095655.1	See Comparison
NZ_CP095650.1	See Comparison
NZ_CP095670.1	See Comparison
NZ_CP095610.1	See Comparison
NZ_CP095626.1	See Comparison
NZ_CP095621.1	See Comparison
NZ_CP095632.1	See Comparison
NZ_CP095606.1	See Comparison
NZ_CP095576.1	See Comparison
NZ_CP095622.1	See Comparison
NZ_CP095601.1	See Comparison
NZ_CP095611.1	See Comparison
NZ_CP095618.1	See Comparison
NZ_CP095663.1	See Comparison
NZ_CP095648.1	See Comparison
NZ_CP095619.1	See Comparison
NZ_CP095624.1	See Comparison
NZ_CP095574.1	See Comparison
NZ_AP023220.2	See Comparison
NZ_MZ892875.1	See Comparison
NZ_CP024840.1	See Comparison
NZ_KY130431.1	See Comparison
NZ_CP127509.1	See Comparison
NZ_CP127512.1	See Comparison
NZ_CP024836.1	See Comparison
NZ_CP095681.1	See Comparison
NZ_CP095683.1	See Comparison
NZ_CP053768.1	See Comparison
NZ_AP023236.1	See Comparison
LC744515.1	See Comparison
NZ_KT725788.1	See Comparison
NZ_AP018144.1	See Comparison
NZ_AP023454.1	See Comparison
NZ_CP054171.1	See Comparison
LC744512.1	See Comparison
LC744498.1	See Comparison
LC744497.1	See Comparison
LC744491.1	See Comparison
LC744488.1	See Comparison
LC744487.1	See Comparison
LC744480.1	See Comparison
LC744475.1	See Comparison
LC744473.1	See Comparison
LC744470.1	See Comparison
LC744467.1	See Comparison
LC744465.1	See Comparison
LC744449.1	See Comparison
LC744443.1	See Comparison
LC744440.1	See Comparison
NZ_CP024836.1	See Comparison
NZ_AP023434.1	See Comparison
NZ_CP095669.1	See Comparison
NZ_CP095655.1	See Comparison
NZ_CP095650.1	See Comparison
NZ_CP095670.1	See Comparison
NZ_CP095626.1	See Comparison
NZ_CP095621.1	See Comparison
NZ_CP095632.1	See Comparison
NZ_CP095606.1	See Comparison
NZ_CP095576.1	See Comparison
NZ_CP095622.1	See Comparison
NZ_CP095601.1	See Comparison
NZ_CP095611.1	See Comparison
NZ_CP095618.1	See Comparison
NZ_CP095663.1	See Comparison
NZ_CP095648.1	See Comparison
NZ_CP095574.1	See Comparison
NZ_CP095610.1	See Comparison
NZ_CP095619.1	See Comparison
NZ_CP095624.1	See Comparison
NZ_MZ892875.1	See Comparison
NZ_AP023220.2	See Comparison
NZ_CP024840.1	See Comparison
NZ_CP095681.1	See Comparison
NZ_CP095683.1	See Comparison
NZ_KY130431.1	See Comparison
NZ_CP127509.1	See Comparison
NZ_CP127512.1	See Comparison
NZ_CP053768.1	See Comparison
NZ_AP023236.1	See Comparison
NZ_KT725788.1	See Comparison
NZ_AP018144.1	See Comparison
NZ_AP023454.1	See Comparison
NZ_AP023434.1	See Comparison
LC744498.1	See Comparison
LC744497.1	See Comparison
LC744491.1	See Comparison
LC744488.1	See Comparison
LC744487.1	See Comparison
LC744480.1	See Comparison
LC744475.1	See Comparison
LC744473.1	See Comparison
LC744470.1	See Comparison
LC744467.1	See Comparison
LC744465.1	See Comparison
LC744449.1	See Comparison
LC744443.1	See Comparison
LC744440.1	See Comparison
NZ_CP054171.1	See Comparison
LC744515.1	See Comparison
LC744512.1	See Comparison
NZ_CP095669.1	See Comparison
NZ_CP095655.1	See Comparison
NZ_CP095650.1	See Comparison
NZ_CP095670.1	See Comparison
NZ_CP095626.1	See Comparison
NZ_CP095621.1	See Comparison
NZ_CP095632.1	See Comparison
NZ_CP095606.1	See Comparison
NZ_CP095576.1	See Comparison
NZ_CP095622.1	See Comparison
NZ_CP095601.1	See Comparison
NZ_CP095611.1	See Comparison
NZ_CP095618.1	See Comparison
NZ_CP095663.1	See Comparison
NZ_CP095648.1	See Comparison
NZ_CP095574.1	See Comparison
NZ_CP095610.1	See Comparison
NZ_CP095619.1	See Comparison
NZ_CP095624.1	See Comparison
NZ_AP023220.2	See Comparison
NZ_MZ892875.1	See Comparison
NZ_CP127509.1	See Comparison
NZ_CP024836.1	See Comparison
NZ_CP024840.1	See Comparison
NZ_CP095681.1	See Comparison
NZ_CP095683.1	See Comparison
NZ_CP127512.1	See Comparison
LC744491.1	See Comparison
NZ_CP053768.1	See Comparison
NZ_AP018144.1	See Comparison
LC744515.1	See Comparison
NZ_KY130431.1	See Comparison
NZ_AP023236.1	See Comparison
NZ_KT725788.1	See Comparison
NZ_AP023454.1	See Comparison
NZ_CP054171.1	See Comparison
LC744488.1	See Comparison
LC744512.1	See Comparison
LC744487.1	See Comparison
LC744480.1	See Comparison
LC744498.1	See Comparison
LC744497.1	See Comparison
LC744475.1	See Comparison
LC744473.1	See Comparison
LC744470.1	See Comparison
LC744467.1	See Comparison
LC744465.1	See Comparison
LC744449.1	See Comparison
LC744443.1	See Comparison
LC744440.1	See Comparison
NZ_CP095681.1	See Comparison
NZ_CP095669.1	See Comparison
NZ_CP095655.1	See Comparison
NZ_CP095650.1	See Comparison
NZ_CP095670.1	See Comparison
NZ_CP095626.1	See Comparison
NZ_CP095621.1	See Comparison
NZ_CP095632.1	See Comparison
NZ_CP095606.1	See Comparison
NZ_CP095576.1	See Comparison
NZ_CP095622.1	See Comparison
NZ_CP095601.1	See Comparison
NZ_CP095611.1	See Comparison
NZ_CP095618.1	See Comparison
NZ_CP095663.1	See Comparison
NZ_CP095648.1	See Comparison
NZ_CP095574.1	See Comparison
NZ_CP095610.1	See Comparison
NZ_AP023434.1	See Comparison
NZ_CP095619.1	See Comparison
NZ_CP095624.1	See Comparison
NZ_MZ892875.1	See Comparison
NZ_AP023220.2	See Comparison
NZ_CP024836.1	See Comparison
NZ_CP024840.1	See Comparison
NZ_CP095683.1	See Comparison
NZ_KY130431.1	See Comparison
NZ_CP127509.1	See Comparison
NZ_CP127512.1	See Comparison
NZ_AP023236.1	See Comparison
NZ_CP053768.1	See Comparison
NZ_KT725788.1	See Comparison
NZ_CP054171.1	See Comparison
NZ_AP018144.1	See Comparison
NZ_AP023454.1	See Comparison
LC744515.1	See Comparison
LC744491.1	See Comparison
LC744488.1	See Comparison
LC744487.1	See Comparison
LC744512.1	See Comparison
LC744498.1	See Comparison
LC744480.1	See Comparison
LC744475.1	See Comparison
LC744473.1	See Comparison
LC744470.1	See Comparison
LC744497.1	See Comparison
LC744467.1	See Comparison
NZ_AP023434.1	See Comparison
LC744465.1	See Comparison
LC744449.1	See Comparison
LC744443.1	See Comparison
LC744440.1	See Comparison
NZ_CP095669.1	See Comparison
NZ_CP095655.1	See Comparison
NZ_CP095650.1	See Comparison
NZ_CP095670.1	See Comparison
NZ_CP095626.1	See Comparison
NZ_CP095621.1	See Comparison
NZ_CP095632.1	See Comparison
NZ_CP095606.1	See Comparison
NZ_CP095576.1	See Comparison
NZ_CP095622.1	See Comparison
NZ_CP095601.1	See Comparison
NZ_CP095611.1	See Comparison
NZ_CP095618.1	See Comparison
NZ_CP095663.1	See Comparison
NZ_CP095648.1	See Comparison
NZ_CP095574.1	See Comparison
NZ_CP095610.1	See Comparison
NZ_CP095619.1	See Comparison
NZ_CP095624.1	See Comparison
NZ_MZ892875.1	See Comparison
NZ_AP023220.2	See Comparison
NZ_CP127509.1	See Comparison
NZ_CP024836.1	See Comparison
NZ_CP024840.1	See Comparison
NZ_CP095681.1	See Comparison
NZ_CP095683.1	See Comparison
NZ_CP127512.1	See Comparison
NZ_AP023236.1	See Comparison
NZ_KY130431.1	See Comparison
NZ_CP053768.1	See Comparison
LC744515.1	See Comparison
NZ_KT725788.1	See Comparison
LC744498.1	See Comparison
LC744497.1	See Comparison
LC744491.1	See Comparison
NZ_AP018144.1	See Comparison
NZ_CP050367.1	See Comparison
NZ_AP023454.1	See Comparison
LC744512.1	See Comparison
LC744488.1	See Comparison
LC744487.1	See Comparison
NZ_CP095669.1	See Comparison
LC744480.1	See Comparison
LC744475.1	See Comparison
LC744473.1	See Comparison
LC744470.1	See Comparison
LC744467.1	See Comparison
LC744465.1	See Comparison
LC744449.1	See Comparison
LC744443.1	See Comparison
LC744440.1	See Comparison
NZ_CP054171.1	See Comparison
NZ_AP023434.1	See Comparison
NZ_CP095655.1	See Comparison
NZ_CP095650.1	See Comparison
NZ_CP095670.1	See Comparison
NZ_CP095626.1	See Comparison
NZ_CP095621.1	See Comparison
NZ_CP095632.1	See Comparison
NZ_CP095606.1	See Comparison
NZ_CP095576.1	See Comparison
NZ_CP095622.1	See Comparison
NZ_CP095601.1	See Comparison
NZ_CP095611.1	See Comparison
NZ_CP095618.1	See Comparison
NZ_CP095663.1	See Comparison
NZ_CP095648.1	See Comparison
NZ_CP095574.1	See Comparison
NZ_CP095610.1	See Comparison
NZ_CP095619.1	See Comparison
NZ_CP095624.1	See Comparison
NZ_MZ892875.1	See Comparison
NZ_AP023220.2	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore