Plasmid NZ_CP127509.1

Sequence

Nucleotide Information

Accession NZ_CP127509.1
Description Klebsiella pneumoniae strain PS00259.4 plasmid pPS00259_4A.2, complete sequence
Source refseq
Topology circular
Length 97919 bp
GC Content 0.53 %
Created at NCBI Feb. 10, 2024



Assembly

Genome Data Information

Accession GCF_036452075.1
Assembly Coverage 337.66


Biosample

Curated Collection Information
Accession 35640679

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 40.7903114N;73.9528738W
Original Query Type coordinates
Coordinates (Lat/Lon) 40.79/-73.95
Address Guggenheim Pavilion, 1190, 5th Avenue, Manhattan Community Board 11, Manhattan, New York County, New York, 10029, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_MZ892875.1 See Comparison
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NZ_CP095632.1 See Comparison
NZ_CP095606.1 See Comparison
NZ_CP095576.1 See Comparison
NZ_CP095622.1 See Comparison
NZ_CP095601.1 See Comparison
NZ_CP095611.1 See Comparison
NZ_CP095618.1 See Comparison
NZ_CP095663.1 See Comparison
NZ_KY130431.1 See Comparison
NZ_CP058942.1 See Comparison
NZ_CP024836.1 See Comparison
NZ_CP024840.1 See Comparison
NZ_CP095681.1 See Comparison
NZ_CP095683.1 See Comparison
NZ_CP127512.1 See Comparison
NZ_CP050367.1 See Comparison
NZ_AP023236.1 See Comparison
NZ_KT725788.1 See Comparison
NZ_AP018144.1 See Comparison
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LC744498.1 See Comparison
LC744497.1 See Comparison
LC744491.1 See Comparison
LC744488.1 See Comparison
LC744487.1 See Comparison
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LC744475.1 See Comparison
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NZ_AP023434.1 See Comparison
NZ_CP095574.1 See Comparison
NZ_CP095610.1 See Comparison
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LC744470.1 See Comparison
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NZ_CP095632.1 See Comparison
NZ_CP095606.1 See Comparison
NZ_CP095576.1 See Comparison
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NZ_CP095601.1 See Comparison
NZ_CP095611.1 See Comparison
NZ_CP095618.1 See Comparison
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NZ_CP095648.1 See Comparison
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NZ_KY130431.1 See Comparison
NZ_CP024836.1 See Comparison
NZ_CP095681.1 See Comparison
NZ_CP095683.1 See Comparison
NZ_CP127509.1 See Comparison
NZ_CP127512.1 See Comparison
NZ_KT725788.1 See Comparison
NZ_AP023236.1 See Comparison
NZ_AP018144.1 See Comparison
NZ_CP050367.1 See Comparison
LC744475.1 See Comparison
LC744515.1 See Comparison
NZ_AP023454.1 See Comparison
LC744473.1 See Comparison
LC744512.1 See Comparison
LC744470.1 See Comparison
LC744467.1 See Comparison
LC744449.1 See Comparison
LC744443.1 See Comparison
LC744498.1 See Comparison
LC744497.1 See Comparison
NZ_CP095669.1 See Comparison
LC744491.1 See Comparison
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LC744487.1 See Comparison
LC744480.1 See Comparison
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NZ_CP095648.1 See Comparison
NZ_CP095655.1 See Comparison
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NZ_CP095621.1 See Comparison
NZ_CP095632.1 See Comparison
NZ_CP095606.1 See Comparison
NZ_CP095576.1 See Comparison
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NZ_CP095611.1 See Comparison
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NZ_CP095683.1 See Comparison
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NZ_AP023236.1 See Comparison
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NZ_AP018144.1 See Comparison
NZ_CP050367.1 See Comparison
NZ_AP023454.1 See Comparison
LC744491.1 See Comparison
LC744488.1 See Comparison
LC744487.1 See Comparison
LC744512.1 See Comparison
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LC744480.1 See Comparison
LC744475.1 See Comparison
LC744473.1 See Comparison
LC744470.1 See Comparison
LC744467.1 See Comparison
LC744449.1 See Comparison
LC744497.1 See Comparison
NZ_CP095669.1 See Comparison
LC744443.1 See Comparison
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NZ_CP095670.1 See Comparison
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NZ_CP095576.1 See Comparison
NZ_CP095622.1 See Comparison
NZ_CP095601.1 See Comparison
NZ_CP095611.1 See Comparison
NZ_CP095618.1 See Comparison
NZ_CP095663.1 See Comparison
NZ_CP095648.1 See Comparison
NZ_CP095574.1 See Comparison
NZ_CP095610.1 See Comparison
NZ_CP095655.1 See Comparison
NZ_CP024836.1 See Comparison
NZ_CP095624.1 See Comparison
NZ_MZ892875.1 See Comparison
NZ_CP058942.1 See Comparison
NZ_CP024840.1 See Comparison
NZ_CP095681.1 See Comparison
NZ_CP095683.1 See Comparison
NZ_CP127512.1 See Comparison
NZ_AP018144.1 See Comparison
NZ_AP023236.1 See Comparison
NZ_KT725788.1 See Comparison
NZ_KY130431.1 See Comparison
NZ_CP050367.1 See Comparison
NZ_CP095669.1 See Comparison
NZ_AP023454.1 See Comparison
LC744491.1 See Comparison
LC744488.1 See Comparison
LC744487.1 See Comparison
LC744480.1 See Comparison
LC744475.1 See Comparison
LC744473.1 See Comparison
LC744470.1 See Comparison
LC744467.1 See Comparison
LC744449.1 See Comparison
LC744443.1 See Comparison
LC744515.1 See Comparison
LC744512.1 See Comparison
LC744498.1 See Comparison
LC744497.1 See Comparison
NZ_AP023434.1 See Comparison
NZ_CP095626.1 See Comparison
NZ_CP095621.1 See Comparison
NZ_CP095632.1 See Comparison
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NZ_CP095576.1 See Comparison
NZ_CP095622.1 See Comparison
NZ_CP095601.1 See Comparison
NZ_CP095611.1 See Comparison
NZ_CP095618.1 See Comparison
NZ_CP095663.1 See Comparison
NZ_CP095648.1 See Comparison
NZ_CP095574.1 See Comparison
NZ_CP095655.1 See Comparison
NZ_CP095610.1 See Comparison
NZ_CP095650.1 See Comparison
NZ_CP095670.1 See Comparison
NZ_CP095681.1 See Comparison
NZ_CP095624.1 See Comparison
NZ_MZ892875.1 See Comparison
NZ_CP058942.1 See Comparison
NZ_CP024836.1 See Comparison
NZ_CP024840.1 See Comparison
NZ_CP095683.1 See Comparison
NZ_AP023236.1 See Comparison
NZ_CP127512.1 See Comparison
NZ_KY130431.1 See Comparison
NZ_AP018144.1 See Comparison
NZ_KT725788.1 See Comparison
NZ_CP050367.1 See Comparison
NZ_AP023454.1 See Comparison
LC744515.1 See Comparison
LC744512.1 See Comparison
LC744480.1 See Comparison
LC744498.1 See Comparison
LC744475.1 See Comparison
LC744473.1 See Comparison
LC744470.1 See Comparison
LC744467.1 See Comparison
LC744497.1 See Comparison
LC744491.1 See Comparison
LC744449.1 See Comparison
LC744443.1 See Comparison
LC744488.1 See Comparison
LC744487.1 See Comparison
NZ_AP023434.1 See Comparison
NZ_CP095606.1 See Comparison
NZ_CP095655.1 See Comparison
NZ_CP095576.1 See Comparison
NZ_CP095622.1 See Comparison
NZ_CP095601.1 See Comparison
NZ_CP095650.1 See Comparison
NZ_CP095670.1 See Comparison
NZ_CP095611.1 See Comparison
NZ_CP095618.1 See Comparison
NZ_CP095669.1 See Comparison
NZ_CP095663.1 See Comparison
NZ_CP095624.1 See Comparison
NZ_CP095648.1 See Comparison
NZ_CP095574.1 See Comparison
NZ_CP095626.1 See Comparison
NZ_CP095621.1 See Comparison
NZ_CP095632.1 See Comparison
NZ_CP095610.1 See Comparison
NZ_MZ892875.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore