Plasmid NZ_CP095669.1
Sequence
Nucleotide Information
| Accession | NZ_CP095669.1 |
|---|---|
| Description | Citrobacter sedlakii strain dmcr749c plasmid p_dmcr749c_NDM5, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 94788 bp |
| GC Content | 0.53 % |
| Created at NCBI | April 21, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Citrobacter sedlakii (67826) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Citrobacter (544) |
| Species | Citrobacter_sedlakii (67826) |
| Strain |
Biosample
Curated Collection Information
| Accession | 18802459 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Bangladesh,Dhaka |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 23.76/90.38 |
| Address | Bangladesh,Dhaka |
ECOSYSTEM
| Original Query | Homo sapiens,Pure culture one microbial species,Wound swab |
|---|---|
| Classification | cell_culture,host_associated,wound |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaNDM-5 | copy | ||
| amrfinderplus | sul1 | copy | ||
| amrfinderplus | blaTEM-1 | copy | ||
| amrfinderplus | aadA2 | copy | ||
| amrfinderplus | erm(B) | copy | ||
| amrfinderplus | dfrA12 | copy | ||
| rgi | ErmB | copy | ||
| amrfinderplus | ble | copy | ||
| rgi | BRP(MBL) | copy | ||
| rgi | mphA | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 125 entries
…
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||||
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_017627_00068 | MOBF | 84442 | 89709 | plus | 97.096 | 100 | 0 | 3343 |
| mate-pair-formation | NC_022651_00077 | MPF_F | 59243 | 59551 | plus | 99.029 | 99 | 4.79e-63 | 212 |
| mate-pair-formation | NC_010409_00124 | MPF_F | 60129 | 60854 | plus | 97.934 | 100 | 6.53e-155 | 483 |
| mate-pair-formation | NC_019094_00090 | MPF_F | 60857 | 62266 | plus | 96.815 | 97 | 0 | 857 |
| mate-pair-formation | NC_017639_00094 | MPF_F | 63168 | 63680 | plus | 98.246 | 100 | 5.42e-98 | 316 |
| mate-pair-formation | NC_013437_00116 | MPF_T | 65316 | 67931 | plus | 91.514 | 99 | 0 | 1648 |
| mate-pair-formation | NC_007675_00027 | MPF_F | 68317 | 68946 | plus | 99.048 | 97 | 3.7999999999999997e-135 | 424 |
| mate-pair-formation | NC_017639_00100 | MPF_F | 68946 | 69902 | plus | 98.746 | 100 | 0 | 605 |
| mate-pair-formation | NC_018966_00040 | MPF_F | 70333 | 70917 | plus | 97.949 | 92 | 4.29e-124 | 393 |
| mate-pair-formation | NC_019094_00068 | MPF_F | 70917 | 72764 | plus | 94.481 | 100 | 0 | 1144 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 15 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |