Plasmid NZ_CP050363.1
Sequence
Nucleotide Information
| Accession | NZ_CP050363.1 |
|---|---|
| Description | Klebsiella pneumoniae strain 47733 plasmid p47733_COLMG828, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 1546 bp |
| GC Content | 0.51 % |
| Created at NCBI | April 1, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 14421539 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 50.08N;14.36E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 50.08/14.36 |
| Address | 1152/66, Tomanova, Břevnov, Prague, obvod Praha 6, Prague, 169 00, Czechia |
ECOSYSTEM
| Original Query | Homo sapiens,Rectal swab |
|---|---|
| Classification | gastrointestinal_system,host_associated,rectal |
| Host-associated Taxon |
|
DISEASE
| Original Query | concussion |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
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100
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | helix-turn-helix domain-containing protein | copy | ||
| MOB-typer | MOB_unknown | copy | ||
| MOB-typer | MOBP | copy | ||
| MOB-typer | Col(MG828) | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 4 of 4 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | NC_008486 | Col(MG828) | 585 | 843 | plus | 95 | 99 | 3.93e-111 | 407 |
| oriT | CP018359 | MOB_unknown | 84 | 193 | plus | 100 | 100 | 1.95e-50 | 204 |
| oriT | NC_018997 | MOBP | 389 | 471 | minus | 100 | 100 | 1.3400000000000002e-35 | 154 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |