Plasmid NZ_CP050365.1

Sequence

Nucleotide Information

Accession NZ_CP050365.1
Description Klebsiella pneumoniae strain 47733 plasmid p47733_IncFIB, complete sequence
Source refseq
Topology circular
Length 115360 bp
GC Content 0.49 %
Created at NCBI April 1, 2020



Assembly

Genome Data Information

Accession GCF_011769725.1
Assembly Coverage 500


Biosample

Curated Collection Information
Accession 14421539

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 50.08N;14.36E
Original Query Type coordinates
Coordinates (Lat/Lon) 50.08/14.36
Address 1152/66, Tomanova, Břevnov, Prague, obvod Praha 6, Prague, 169 00, Czechia

ECOSYSTEM
Original Query Homo sapiens,Rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query concussion
DOID/SYMP
  • Traumatic brain injury (DOID:0081292 )
    • A brain disease that is characterized by brain dysfunction caused by an outside force, usually a violent blow to the head.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore