Plasmid NZ_CP054171.1
Sequence
Nucleotide Information
| Accession | NZ_CP054171.1 |
|---|---|
| Description | Klebsiella pneumoniae strain BA12818 plasmid pIncFII, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 92972 bp |
| GC Content | 0.53 % |
| Created at NCBI | June 1, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 14402333 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 12.9246N;79.1348E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 12.92/79.13 |
| Address | Christian Medical College Hospital, Ida Scudder Road, Sathuvachari, Vellore, Vellore District, Tamil Nadu, 632004, India |
ECOSYSTEM
| Original Query | Homo sapiens,blood |
|---|---|
| Classification | blood,circulatory_system,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | Bacteremia |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| rgi | Mrx | copy | ||
| amrfinderplus | rmtB1 | copy | ||
| amrfinderplus | qacEdelta1 | copy | ||
| amrfinderplus | mph(A) | copy | ||
| amrfinderplus | sul1 | copy | ||
| amrfinderplus | erm(B) | copy | ||
| rgi | rmtB | copy | ||
| amrfinderplus | blaTEM-1 | copy | ||
| amrfinderplus | blaNDM-5 | copy | ||
| amrfinderplus | ble | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 124 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000136__AP014877_00014 | IncFIA | 1 | 858 | plus | 96.74 | 100 | 0 | 1430 |
| replicon | AY458016 | IncFIC | 92715 | 92972 | minus | 100 | 99 | 2.94e-132 | 477 |
| relaxase | NC_017627_00068 | MOBF | 82626 | 87893 | plus | 97.096 | 100 | 0 | 3343 |
| mate-pair-formation | NC_022651_00077 | MPF_F | 57427 | 57735 | plus | 99.029 | 99 | 4.79e-63 | 212 |
| mate-pair-formation | NC_010409_00124 | MPF_F | 58313 | 59038 | plus | 97.934 | 100 | 6.53e-155 | 483 |
| mate-pair-formation | NC_019094_00090 | MPF_F | 59041 | 60450 | plus | 96.815 | 97 | 0 | 857 |
| mate-pair-formation | NC_017639_00094 | MPF_F | 61352 | 61864 | plus | 98.246 | 100 | 5.42e-98 | 316 |
| mate-pair-formation | NC_013437_00116 | MPF_T | 63500 | 66115 | plus | 91.514 | 99 | 0 | 1648 |
| mate-pair-formation | NC_007675_00027 | MPF_F | 66501 | 67130 | plus | 99.048 | 97 | 3.7999999999999997e-135 | 424 |
| mate-pair-formation | NC_017639_00100 | MPF_F | 67130 | 68086 | plus | 98.746 | 100 | 0 | 605 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 15 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |