Plasmid LC744440.1
Sequence
Nucleotide Information
| Accession | LC744440.1 |
|---|---|
| Description | Escherichia coli MyJU792 plasmid pMyJU792 DNA, complete sequence |
| Source | insd |
| Topology | circular |
| Length | 94240 bp |
| GC Content | 0.53 % |
| Created at NCBI | Dec. 24, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Similar Plasmids
based on Mash distance
Plasmid Visualization
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B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | sul1 | copy | ||
| amrfinderplus | mph(A) | copy | ||
| rgi | rmtB | copy | ||
| amrfinderplus | blaNDM-5 | copy | ||
| amrfinderplus | aadA2 | copy | ||
| amrfinderplus | erm(B) | copy | ||
| amrfinderplus | dfrA12 | copy | ||
| amrfinderplus | blaTEM-1 | copy | ||
| amrfinderplus | ble | copy | ||
| rgi | mphA | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 138 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | AP014804 | MOBP | 56220 | 56769 | plus | 100 | 100 | 0 | 1016 |
| replicon | MK878891_00042 | IncFIA | 31 | 858 | plus | 99.034 | 97 | 0 | 1485 |
| replicon | AY458016 | IncFIC | 93983 | 94240 | minus | 100 | 99 | 2.94e-132 | 477 |
| relaxase | NC_017627_00068 | MOBF | 83894 | 89161 | plus | 97.153 | 100 | 0 | 3345 |
| mate-pair-formation | NC_022651_00077 | MPF_F | 58776 | 59084 | plus | 99.029 | 99 | 4.79e-63 | 212 |
| mate-pair-formation | NC_010409_00124 | MPF_F | 59662 | 60387 | plus | 97.934 | 100 | 6.53e-155 | 483 |
| mate-pair-formation | NC_019094_00090 | MPF_F | 60390 | 61799 | plus | 96.815 | 97 | 0 | 857 |
| mate-pair-formation | NC_017639_00094 | MPF_F | 62701 | 63213 | plus | 98.246 | 100 | 5.42e-98 | 316 |
| mate-pair-formation | NC_013437_00116 | MPF_T | 64849 | 67464 | plus | 91.514 | 99 | 0 | 1648 |
| mate-pair-formation | NC_007675_00027 | MPF_F | 67850 | 68479 | plus | 99.048 | 97 | 3.7999999999999997e-135 | 424 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 15 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |