Plasmid NZ_CP049856.1

Sequence

Nucleotide Information

Accession	NZ_CP049856.1
Description	Escherichia coli strain UPEC-774U/190308 plasmid pEcoUTI1a, complete sequence
Source	refseq
Topology	circular
Length	2113 bp
GC Content	0.47 %
Created at NCBI	Aug. 5, 2021

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_019443685.1
Assembly Coverage	189.523

Biosample

Curated Collection Information

Accession	14277526

PLASMID INFORMATION

BIOSAMPLE_pathotype	Escherichia coli, UPEC

GEOGRAPHICAL INFORMATION

Original Query	Mexico,Mexico City
Original Query Type	name
Coordinates (Lat/Lon)	19.43/-99.13
Address	Mexico,Mexico City

ECOSYSTEM

Original Query	Homo sapiens,Biopsy of human bladder epithelium,bladder epithelial biopsy from 50-year-old female patient with recurrent urinary tract infection
Classification	bladder,disease,host_associated,urinary_system
Host-associated Taxon	Homo sapiens (9606)
Host-associated Age	50 years
Host-associated Sex	female

DISEASE

Original Query	Recurrent urinary tract infection,chronic disease,chronic disease,chronic disease
DOID/SYMP	Urinary tract infection (DOID:0080784 ) An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra. Disease (DOID:4 ) A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Original Query

Recurrent urinary tract infection,chronic disease,chronic disease,chronic disease

DOID/SYMP

Urinary tract infection (DOID:0080784 )

Disease (DOID:4 )

Visualization

Plasmids from same Biosample

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based on Mash distance

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CP067709.1	See Comparison
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NZ_CP054163.1	See Comparison
NZ_CP079691.1	See Comparison
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NZ_CP049842.1	See Comparison
NZ_CP079616.1	See Comparison
NZ_CP049856.1	See Comparison
NZ_CP076316.1	See Comparison
NZ_CP059133.1	See Comparison
CP077255.1	See Comparison
CP077227.1	See Comparison
MW363524.1	See Comparison
NZ_CP076347.1	See Comparison
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NZ_CP023648.1	See Comparison
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NZ_CP135222.1	See Comparison
NZ_CP023902.1	See Comparison
AP027720.1	See Comparison
NZ_CP135229.1	See Comparison
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CP054341.1	See Comparison
CP054324.1	See Comparison
NZ_AP027499.1	See Comparison
NZ_CP043411.1	See Comparison
CP052212.1	See Comparison
NZ_CP045788.1	See Comparison
NZ_CP050362.1	See Comparison
NZ_CP048319.1	See Comparison
NZ_CP048370.1	See Comparison
NZ_CP048366.1	See Comparison
NZ_CP070444.1	See Comparison
NZ_CP046422.1	See Comparison
NZ_CP070424.1	See Comparison
NZ_CP070458.1	See Comparison
NZ_CP070031.1	See Comparison
NZ_CP069869.1	See Comparison
NZ_CP070004.1	See Comparison
NZ_CP070081.1	See Comparison
NZ_CP070099.1	See Comparison
NZ_LR890414.1	See Comparison
NZ_LR890540.1	See Comparison
NZ_CP061366.1	See Comparison
NZ_CP061112.1	See Comparison
NZ_CP064850.1	See Comparison
NZ_CP063007.1	See Comparison
NZ_CP060427.1	See Comparison
NZ_AP022212.1	See Comparison
NZ_AP022054.1	See Comparison
NZ_AP022104.1	See Comparison
NZ_AP021968.1	See Comparison
CP117209.1	See Comparison
NZ_AP022170.1	See Comparison
NZ_CP102700.1	See Comparison
NZ_OP242305.1	See Comparison
NZ_CP116922.1	See Comparison
NZ_CP116105.1	See Comparison
NZ_CP116122.1	See Comparison
NZ_CP116193.1	See Comparison
NZ_CP116196.1	See Comparison
NZ_CP116134.1	See Comparison
NZ_CP116143.1	See Comparison
NZ_CP103565.1	See Comparison
NZ_CP060119.1	See Comparison
NZ_CP103625.1	See Comparison
NZ_CP103476.1	See Comparison
NZ_CP101208.1	See Comparison
NZ_OX030736.1	See Comparison
NZ_CP101231.1	See Comparison
NZ_CP069211.1	See Comparison
NZ_CP043278.1	See Comparison
NZ_CP060960.1	See Comparison
NZ_CP060945.1	See Comparison
NZ_CP091697.1	See Comparison
NZ_CP091663.1	See Comparison
NZ_CP091711.1	See Comparison
CP067709.1	See Comparison
NZ_CP091690.1	See Comparison
NZ_CP054163.1	See Comparison
NZ_CP091990.1	See Comparison
NZ_CP085067.1	See Comparison
NZ_CP083080.1	See Comparison
NZ_CP072472.1	See Comparison
NZ_CP059133.1	See Comparison
NZ_CP079691.1	See Comparison
NZ_CP079616.1	See Comparison
NZ_CP076347.1	See Comparison
NZ_CP076316.1	See Comparison
MW363524.1	See Comparison
NZ_CP053255.2	See Comparison
NZ_AP023234.2	See Comparison
NZ_AP023223.2	See Comparison
NZ_CP049842.1	See Comparison
CP077383.1	See Comparison
CP077358.1	See Comparison
CP077346.1	See Comparison
CP077278.1	See Comparison
CP077284.1	See Comparison
CP077255.1	See Comparison
CP077227.1	See Comparison
NZ_CP067254.1	See Comparison
NZ_CP008719.1	See Comparison
NZ_CP069674.1	See Comparison
NZ_CP023648.1	See Comparison
NZ_CP011141.1	See Comparison
NC_016824.1	See Comparison
NC_009347.1	See Comparison
NZ_CP033766.1	See Comparison
NZ_CP034961.1	See Comparison
NZ_CP029105.1	See Comparison
NZ_CP030115.1	See Comparison
NZ_CP029366.1	See Comparison
NZ_CP023902.1	See Comparison
NZ_CP027132.1	See Comparison
AP027720.1	See Comparison
NZ_CP135725.1	See Comparison
NZ_CP135222.1	See Comparison
NZ_CP135229.1	See Comparison
NZ_CP135216.1	See Comparison
NZ_CP135663.1	See Comparison
NZ_CP048319.1	See Comparison
NZ_CP058899.1	See Comparison
NZ_CP059338.1	See Comparison
NZ_CP115347.1	See Comparison
NZ_CP058924.1	See Comparison
NZ_CP115323.1	See Comparison
NZ_CP059341.1	See Comparison
NZ_CP058920.1	See Comparison
NZ_AP027977.1	See Comparison
NZ_AP027984.1	See Comparison
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CP125070.1	See Comparison
CP125026.1	See Comparison
CP125019.1	See Comparison
CP125058.1	See Comparison
CP125032.1	See Comparison
CP125052.1	See Comparison
NZ_CP123236.1	See Comparison
NZ_CP151381.1	See Comparison
NZ_CP151363.1	See Comparison
NZ_CP145626.1	See Comparison
NZ_CP145644.1	See Comparison
NZ_CP145688.1	See Comparison
NZ_CP145654.1	See Comparison
NZ_AP027842.1	See Comparison
NZ_AP027499.1	See Comparison
NZ_CP140509.1	See Comparison
NZ_CP054218.1	See Comparison
CP054463.1	See Comparison
NZ_CP054361.1	See Comparison
CP054341.1	See Comparison
CP054324.1	See Comparison
NZ_AP022657.1	See Comparison
CP052212.1	See Comparison
NZ_CP050362.1	See Comparison
NZ_CP048370.1	See Comparison
NZ_CP082051.1	See Comparison
NZ_CP082065.1	See Comparison
NZ_CP124383.1	See Comparison
NZ_OZ038810.1	See Comparison
NZ_OZ040272.1	See Comparison
NZ_CP146293.2	See Comparison
NZ_CP151675.1	See Comparison
NZ_CP149251.1	See Comparison
NZ_CP151356.1	See Comparison
NZ_CP151401.1	See Comparison
NZ_CP151310.1	See Comparison
NZ_CP151342.1	See Comparison
NZ_CP142952.1	See Comparison
CP056791.1	See Comparison
NZ_CP058660.1	See Comparison
NZ_CP058655.1	See Comparison
NZ_CP058665.1	See Comparison
NZ_CP043411.1	See Comparison
NZ_CP045788.1	See Comparison
NZ_CP048366.1	See Comparison
NZ_CP070444.1	See Comparison
NZ_CP046422.1	See Comparison
NZ_CP070424.1	See Comparison
NZ_CP070458.1	See Comparison
NZ_LR890540.1	See Comparison
NZ_CP070031.1	See Comparison
NZ_CP069869.1	See Comparison
NZ_CP070004.1	See Comparison
NZ_CP070081.1	See Comparison
NZ_CP070099.1	See Comparison
NZ_LR890414.1	See Comparison
NZ_CP061112.1	See Comparison
NZ_CP064850.1	See Comparison
NZ_CP063007.1	See Comparison
NZ_AP022170.1	See Comparison
NZ_CP060427.1	See Comparison
NZ_AP022104.1	See Comparison
NZ_AP022212.1	See Comparison
NZ_AP022054.1	See Comparison
NZ_AP021968.1	See Comparison
NZ_CP102700.1	See Comparison
NZ_OP242305.1	See Comparison
NZ_CP116922.1	See Comparison
CP117209.1	See Comparison
NZ_CP116193.1	See Comparison
NZ_CP116196.1	See Comparison
NZ_CP116134.1	See Comparison
NZ_CP116105.1	See Comparison
NZ_CP116122.1	See Comparison
NZ_CP060119.1	See Comparison
NZ_OX030736.1	See Comparison
NZ_CP061366.1	See Comparison
NZ_CP103565.1	See Comparison
NZ_CP103625.1	See Comparison
NZ_CP103476.1	See Comparison
NZ_CP101231.1	See Comparison
NZ_CP101208.1	See Comparison
NZ_CP116143.1	See Comparison
NZ_CP069211.1	See Comparison
NZ_CP060960.1	See Comparison
NZ_CP043278.1	See Comparison
NZ_CP060945.1	See Comparison
NZ_CP091711.1	See Comparison
NZ_CP091690.1	See Comparison
NZ_CP091697.1	See Comparison
NZ_CP091663.1	See Comparison
CP067709.1	See Comparison
NZ_CP083080.1	See Comparison
NZ_CP091990.1	See Comparison
NZ_CP054163.1	See Comparison
NZ_CP011141.1	See Comparison
NZ_CP079691.1	See Comparison
NZ_CP079616.1	See Comparison
CP077346.1	See Comparison
CP077278.1	See Comparison
CP077284.1	See Comparison
CP077255.1	See Comparison
CP077227.1	See Comparison
NZ_CP076347.1	See Comparison
NZ_AP023223.2	See Comparison
NZ_CP072472.1	See Comparison
NZ_CP067254.1	See Comparison
NZ_CP069674.1	See Comparison
NZ_CP085067.1	See Comparison
NZ_CP049842.1	See Comparison
NZ_CP059133.1	See Comparison
CP077383.1	See Comparison
CP077358.1	See Comparison
NZ_CP076316.1	See Comparison
MW363524.1	See Comparison
NC_016824.1	See Comparison
NC_009347.1	See Comparison
NZ_CP023648.1	See Comparison
NZ_CP033766.1	See Comparison
NZ_CP053255.2	See Comparison
NZ_AP023234.2	See Comparison
NZ_CP034961.1	See Comparison
NZ_CP029105.1	See Comparison
NZ_CP030115.1	See Comparison
NZ_CP029366.1	See Comparison
AP027720.1	See Comparison
NZ_CP027132.1	See Comparison
NZ_CP023902.1	See Comparison
NZ_CP135725.1	See Comparison
NZ_CP135663.1	See Comparison
NZ_CP135222.1	See Comparison
NZ_CP135229.1	See Comparison
NZ_CP135216.1	See Comparison
NZ_CP058899.1	See Comparison
NZ_CP059338.1	See Comparison
NZ_CP115347.1	See Comparison
NZ_CP058924.1	See Comparison
NZ_CP115323.1	See Comparison
NZ_CP059341.1	See Comparison
NZ_CP058920.1	See Comparison
NZ_CP058665.1	See Comparison
NZ_CP124404.1	See Comparison
CP125019.1	See Comparison
CP125058.1	See Comparison
CP125032.1	See Comparison
CP125052.1	See Comparison
NZ_CP124383.1	See Comparison
NZ_CP123236.1	See Comparison
NZ_CP146293.2	See Comparison
NZ_CP151675.1	See Comparison
NZ_CP151401.1	See Comparison
NZ_CP151310.1	See Comparison
NZ_CP151342.1	See Comparison
NZ_CP151381.1	See Comparison
NZ_CP145626.1	See Comparison
NZ_CP145644.1	See Comparison
NZ_CP145688.1	See Comparison
NZ_AP027842.1	See Comparison
NZ_AP027499.1	See Comparison
NZ_CP142952.1	See Comparison
NZ_CP140509.1	See Comparison
CP056791.1	See Comparison
NZ_CP058660.1	See Comparison
NZ_CP058655.1	See Comparison
NZ_CP008719.1	See Comparison
NZ_CP082051.1	See Comparison
NZ_CP082065.1	See Comparison
NZ_AP027977.1	See Comparison
NZ_AP027984.1	See Comparison
CP125070.1	See Comparison
CP125026.1	See Comparison
NZ_OZ038810.1	See Comparison
NZ_OZ040272.1	See Comparison
NZ_CP149251.1	See Comparison
NZ_CP151356.1	See Comparison
NZ_CP151363.1	See Comparison
NZ_CP145654.1	See Comparison
NZ_CP054218.1	See Comparison
CP054463.1	See Comparison
NZ_CP043411.1	See Comparison
CP054341.1	See Comparison
CP054324.1	See Comparison
NZ_CP054361.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore