Plasmid NZ_CP049854.1

Sequence

Nucleotide Information

Accession NZ_CP049854.1
Description Escherichia coli strain UPEC-774U/190308 plasmid pEcoUTI1c, complete sequence
Source refseq
Topology circular
Length 5631 bp
GC Content 0.47 %
Created at NCBI Aug. 5, 2021



Assembly

Genome Data Information

Accession GCF_019443685.1
Assembly Coverage 189.523


Biosample

Curated Collection Information
Accession 14277526

PLASMID INFORMATION
BIOSAMPLE_pathotype Escherichia coli, UPEC

GEOGRAPHICAL INFORMATION
Original Query Mexico,Mexico City
Original Query Type name
Coordinates (Lat/Lon) 19.43/-99.13
Address Mexico,Mexico City

ECOSYSTEM
Original Query Homo sapiens,Biopsy of human bladder epithelium,bladder epithelial biopsy from 50-year-old female patient with recurrent urinary tract infection
Classification bladder,disease,host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 50 years
Host-associated Sex female

DISEASE
Original Query Recurrent urinary tract infection,chronic disease,chronic disease,chronic disease
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore