Plasmid CP052441.1

Sequence

Nucleotide Information

Accession CP052441.1
Description Klebsiella pneumoniae strain C16KP0102 plasmid pC16KP0102-1, complete sequence
Source insd
Topology circular
Length 241567 bp
GC Content 0.52 %
Created at NCBI May 4, 2020



Biosample

Curated Collection Information
Accession 14609889

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.82N;128.16E
Original Query Type coordinates
Coordinates (Lat/Lon) 37.82/128.16
Address Ahopsari-ro, Naechon-myeon, Hongcheon-gun, Gangwon State, 25162, South Korea

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP121144.1 See Comparison
NZ_CP121142.1 See Comparison
NZ_CP121130.1 See Comparison
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NZ_CP103730.1 See Comparison
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NZ_OV408203.1 See Comparison
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NZ_CP121128.1 See Comparison
NZ_CP121144.1 See Comparison
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OW968121.1 See Comparison
OW848947.1 See Comparison
OW967030.1 See Comparison
OW848970.1 See Comparison
OW848958.1 See Comparison
OW848940.1 See Comparison
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OW968148.1 See Comparison
OW968121.1 See Comparison
OW967030.1 See Comparison
OW848970.1 See Comparison
OW848958.1 See Comparison
OW848947.1 See Comparison
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OW848940.1 See Comparison
OW848909.1 See Comparison
OW849326.1 See Comparison
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NZ_CP121128.1 See Comparison
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OW848947.1 See Comparison
OW848940.1 See Comparison
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OW848863.1 See Comparison
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CP067449.1 See Comparison
NZ_CP073628.1 See Comparison
CP146574.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
CP155720.1 See Comparison
NZ_CP151001.1 See Comparison
CP137924.1 See Comparison
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NZ_CP131947.1 See Comparison
NZ_CP141555.1 See Comparison
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NZ_CP141580.1 See Comparison
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NZ_CP067371.1 See Comparison
CP052243.1 See Comparison
NZ_CP065168.1 See Comparison
NZ_CP103730.1 See Comparison
OX030699.1 See Comparison
NZ_OW967375.1 See Comparison
NZ_OV408203.1 See Comparison
NZ_CP121134.1 See Comparison
NZ_CP121132.1 See Comparison
NZ_CP121146.1 See Comparison
NZ_CP121138.1 See Comparison
NZ_CP121136.1 See Comparison
NZ_CP121128.1 See Comparison
NZ_CP121144.1 See Comparison
NZ_CP121142.1 See Comparison
NZ_CP121130.1 See Comparison
NZ_CP089885.1 See Comparison
OW968148.1 See Comparison
OW968121.1 See Comparison
OW848863.1 See Comparison
OW967030.1 See Comparison
OW848970.1 See Comparison
OW848958.1 See Comparison
OW848947.1 See Comparison
OW848940.1 See Comparison
OW848909.1 See Comparison
OW848846.1 See Comparison
OW849326.1 See Comparison
OW849071.1 See Comparison
OW849024.1 See Comparison
OW849017.1 See Comparison
NZ_CP086456.1 See Comparison
NZ_CP086465.1 See Comparison
NZ_CP086468.1 See Comparison
CP094886.1 See Comparison
CP094884.1 See Comparison
NZ_CP086459.1 See Comparison
NZ_CP086462.1 See Comparison
CP067661.1 See Comparison
CP067952.1 See Comparison
CP067949.1 See Comparison
NZ_CP073628.1 See Comparison
CP067449.1 See Comparison
NZ_CP151001.1 See Comparison
NZ_CP133742.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
CP155720.1 See Comparison
CP137924.1 See Comparison
NZ_CP131947.1 See Comparison
NZ_CP141555.1 See Comparison
CP146574.1 See Comparison
NZ_CP141566.1 See Comparison
NZ_CP141580.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore