Plasmid CP146574.1

Sequence

Nucleotide Information

Accession CP146574.1
Description Klebsiella pneumoniae strain B1.S1.10 plasmid pB1.S1.10.c132, complete sequence
Source insd
Topology circular
Length 232858 bp
GC Content 0.52 %
Created at NCBI March 9, 2024



Biosample

Curated Collection Information
Accession 40199717

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 53.77N;20.48E
Original Query Type coordinates
Coordinates (Lat/Lon) 53.77/20.48
Address Miejski Szpital Zespolony w Olsztynie, Łynostrada, Podgrodzie, Olsztyn, Warmian-Masurian Voivodeship, 10-048, Poland

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age Child

DISEASE
Original Query Urinary Tract Infection
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP133845.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
CP146574.1 See Comparison
CP052441.1 See Comparison
NZ_LR890572.1 See Comparison
CP067676.1 See Comparison
OW969649.1 See Comparison
NZ_CP097412.1 See Comparison
NZ_CP097416.1 See Comparison
CP024516.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
CP067952.1 See Comparison
CP067952.1 See Comparison
CP024516.1 See Comparison
NZ_CP133845.1 See Comparison
CP052441.1 See Comparison
NZ_LR890572.1 See Comparison
NZ_CP097412.1 See Comparison
NZ_CP097416.1 See Comparison
OW969649.1 See Comparison
CP067676.1 See Comparison
NZ_CP133845.1 See Comparison
NZ_CP097412.1 See Comparison
CP052441.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
NZ_LR890572.1 See Comparison
NZ_CP097416.1 See Comparison
OW969649.1 See Comparison
CP067952.1 See Comparison
NZ_CP129791.1 See Comparison
CP067676.1 See Comparison
CP024516.1 See Comparison
NZ_CP133845.1 See Comparison
NZ_CP129800.1 See Comparison
CP052441.1 See Comparison
CP067952.1 See Comparison
NZ_LR890572.1 See Comparison
NZ_CP097412.1 See Comparison
NZ_CP097416.1 See Comparison
OW969649.1 See Comparison
CP024516.1 See Comparison
CP067676.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP133845.1 See Comparison
NZ_CP129800.1 See Comparison
NZ_LR890572.1 See Comparison
CP052441.1 See Comparison
NZ_CP097412.1 See Comparison
NZ_CP097416.1 See Comparison
CP024516.1 See Comparison
OW969649.1 See Comparison
CP067676.1 See Comparison
CP067952.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP133845.1 See Comparison
NZ_CP129800.1 See Comparison
NZ_LR890572.1 See Comparison
CP052441.1 See Comparison
CP067676.1 See Comparison
CP067952.1 See Comparison
NZ_CP097412.1 See Comparison
NZ_CP097416.1 See Comparison
OW969649.1 See Comparison
CP024516.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore