Plasmid NZ_OV408203.1

Sequence

Nucleotide Information

Accession NZ_OV408203.1
Description Klebsiella pneumoniae isolate CNR146C9 plasmid p1
Source refseq
Topology linear
Length 237007 bp
GC Content 0.52 %
Created at NCBI April 30, 2022



Assembly

Genome Data Information

Accession GCF_924899195.1
Assembly Coverage 15


Biosample

Curated Collection Information
Accession 28244799

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query France
Original Query Type name
Coordinates (Lat/Lon) 46.60/1.89
Address France

ECOSYSTEM
Original Query Homo sapiens,Rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

OW968148.1 See Comparison
OW848958.1 See Comparison
OW848947.1 See Comparison
OW848940.1 See Comparison
OW848909.1 See Comparison
OW849071.1 See Comparison
OW849024.1 See Comparison
OW849017.1 See Comparison
NZ_CP129791.1 See Comparison
KY271404.1 See Comparison
NZ_CP129800.1 See Comparison
CP052441.1 See Comparison
OW849071.1 See Comparison
OW968148.1 See Comparison
OW848958.1 See Comparison
OW848947.1 See Comparison
OW848940.1 See Comparison
OW848909.1 See Comparison
NZ_CP129791.1 See Comparison
OW849024.1 See Comparison
OW849017.1 See Comparison
KY271404.1 See Comparison
NZ_CP129800.1 See Comparison
OW848958.1 See Comparison
CP052441.1 See Comparison
OW968148.1 See Comparison
OW848947.1 See Comparison
OW848940.1 See Comparison
OW848909.1 See Comparison
CP052441.1 See Comparison
OW849071.1 See Comparison
OW849024.1 See Comparison
KY271404.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
OW849017.1 See Comparison
OW848958.1 See Comparison
OW968148.1 See Comparison
OW848947.1 See Comparison
OW848940.1 See Comparison
OW848909.1 See Comparison
KY271404.1 See Comparison
OW849071.1 See Comparison
OW849024.1 See Comparison
OW849017.1 See Comparison
KY271404.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
CP052441.1 See Comparison
OW968148.1 See Comparison
OW848958.1 See Comparison
OW848947.1 See Comparison
OW848940.1 See Comparison
OW848909.1 See Comparison
OW849071.1 See Comparison
OW849024.1 See Comparison
OW849017.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
OW849071.1 See Comparison
CP052441.1 See Comparison
OW968148.1 See Comparison
OW848958.1 See Comparison
OW848947.1 See Comparison
OW848940.1 See Comparison
OW848909.1 See Comparison
OW849024.1 See Comparison
OW849017.1 See Comparison
NZ_CP129791.1 See Comparison
KY271404.1 See Comparison
NZ_CP129800.1 See Comparison
CP052441.1 See Comparison
NZ_OV408203.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore