Plasmid CP067952.1

Sequence

Nucleotide Information

Accession CP067952.1
Description Klebsiella pneumoniae strain ARLG-4771 plasmid pC1122_1, complete sequence
Source insd
Topology circular
Length 237969 bp
GC Content 0.52 %
Created at NCBI March 2, 2022



Assembly

Genome Data Information

Accession GCF_022439285.1
Assembly Coverage 164


Biosample

Curated Collection Information
Accession 15869095

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,Midwest
Original Query Type name
Coordinates (Lat/Lon) 43.41/-106.28
Address USA,Midwest

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP097412.1 See Comparison
NZ_CP097416.1 See Comparison
OW968148.1 See Comparison
OW968042.1 See Comparison
OW848970.1 See Comparison
OW848958.1 See Comparison
OW848947.1 See Comparison
OW848940.1 See Comparison
OW848909.1 See Comparison
OW848863.1 See Comparison
OW849326.1 See Comparison
OW849024.1 See Comparison
OW849017.1 See Comparison
NZ_CP086459.1 See Comparison
NZ_CP086465.1 See Comparison
NZ_CP086468.1 See Comparison
CP067676.1 See Comparison
NZ_CP073628.1 See Comparison
CP052441.1 See Comparison
NZ_CP133845.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
CP155720.1 See Comparison
CP146574.1 See Comparison
NZ_CP065168.1 See Comparison
NZ_CP103730.1 See Comparison
NZ_CP121134.1 See Comparison
NZ_CP121132.1 See Comparison
NZ_CP121146.1 See Comparison
NZ_CP121138.1 See Comparison
NZ_CP121136.1 See Comparison
NZ_CP121128.1 See Comparison
NZ_CP121144.1 See Comparison
NZ_CP121142.1 See Comparison
NZ_CP121130.1 See Comparison
NZ_CP089885.1 See Comparison
OX030699.1 See Comparison
NZ_CP097412.1 See Comparison
NZ_CP097416.1 See Comparison
OW968148.1 See Comparison
OW968042.1 See Comparison
OW848863.1 See Comparison
OW848909.1 See Comparison
OW848970.1 See Comparison
OW848958.1 See Comparison
OW848947.1 See Comparison
OW848940.1 See Comparison
OW849326.1 See Comparison
OW849024.1 See Comparison
OW849017.1 See Comparison
NZ_CP086459.1 See Comparison
NZ_CP086465.1 See Comparison
NZ_CP086468.1 See Comparison
CP067952.1 See Comparison
NZ_CP133845.1 See Comparison
CP067676.1 See Comparison
NZ_CP073628.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
CP155720.1 See Comparison
CP146574.1 See Comparison
CP052441.1 See Comparison
NZ_CP065168.1 See Comparison
OW968148.1 See Comparison
NZ_CP103730.1 See Comparison
NZ_CP097412.1 See Comparison
NZ_CP097416.1 See Comparison
NZ_CP121134.1 See Comparison
NZ_CP121132.1 See Comparison
NZ_CP121146.1 See Comparison
NZ_CP121138.1 See Comparison
NZ_CP121136.1 See Comparison
NZ_CP121128.1 See Comparison
NZ_CP121144.1 See Comparison
NZ_CP121142.1 See Comparison
NZ_CP121130.1 See Comparison
NZ_CP089885.1 See Comparison
OX030699.1 See Comparison
OW849024.1 See Comparison
OW968042.1 See Comparison
OW848970.1 See Comparison
OW848958.1 See Comparison
OW848947.1 See Comparison
OW848940.1 See Comparison
OW848909.1 See Comparison
OW848863.1 See Comparison
OW849326.1 See Comparison
OW849017.1 See Comparison
NZ_CP086459.1 See Comparison
NZ_CP086465.1 See Comparison
NZ_CP086468.1 See Comparison
NZ_CP133845.1 See Comparison
CP067676.1 See Comparison
NZ_CP073628.1 See Comparison
CP052441.1 See Comparison
CP155720.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
CP146574.1 See Comparison
NZ_CP121134.1 See Comparison
NZ_CP065168.1 See Comparison
NZ_CP121132.1 See Comparison
NZ_CP121146.1 See Comparison
NZ_CP121138.1 See Comparison
NZ_CP121136.1 See Comparison
NZ_CP121128.1 See Comparison
NZ_CP121144.1 See Comparison
NZ_CP121142.1 See Comparison
NZ_CP121130.1 See Comparison
NZ_CP089885.1 See Comparison
NZ_CP103730.1 See Comparison
OX030699.1 See Comparison
OW968148.1 See Comparison
NZ_CP097412.1 See Comparison
NZ_CP097416.1 See Comparison
OW968042.1 See Comparison
OW849024.1 See Comparison
OW848970.1 See Comparison
OW848958.1 See Comparison
OW848947.1 See Comparison
OW848940.1 See Comparison
OW848909.1 See Comparison
OW848863.1 See Comparison
OW849326.1 See Comparison
OW849017.1 See Comparison
NZ_CP086465.1 See Comparison
NZ_CP086468.1 See Comparison
CP067676.1 See Comparison
NZ_CP086459.1 See Comparison
NZ_CP073628.1 See Comparison
CP155720.1 See Comparison
NZ_CP133845.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
CP146574.1 See Comparison
CP052441.1 See Comparison
NZ_CP097412.1 See Comparison
NZ_CP065168.1 See Comparison
NZ_CP121134.1 See Comparison
NZ_CP121132.1 See Comparison
NZ_CP121146.1 See Comparison
NZ_CP121138.1 See Comparison
NZ_CP121136.1 See Comparison
NZ_CP121128.1 See Comparison
NZ_CP121144.1 See Comparison
NZ_CP121142.1 See Comparison
NZ_CP121130.1 See Comparison
NZ_CP089885.1 See Comparison
NZ_CP103730.1 See Comparison
OX030699.1 See Comparison
NZ_CP097416.1 See Comparison
CP052441.1 See Comparison
OW968148.1 See Comparison
OW968042.1 See Comparison
OW848970.1 See Comparison
OW848958.1 See Comparison
OW848947.1 See Comparison
OW848940.1 See Comparison
OW848909.1 See Comparison
OW848863.1 See Comparison
OW849326.1 See Comparison
OW849024.1 See Comparison
OW849017.1 See Comparison
NZ_CP086459.1 See Comparison
NZ_CP086465.1 See Comparison
NZ_CP086468.1 See Comparison
CP067676.1 See Comparison
NZ_CP073628.1 See Comparison
NZ_CP133845.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
CP155720.1 See Comparison
CP146574.1 See Comparison
NZ_CP121134.1 See Comparison
NZ_CP065168.1 See Comparison
NZ_CP121132.1 See Comparison
NZ_CP121146.1 See Comparison
NZ_CP121138.1 See Comparison
NZ_CP121136.1 See Comparison
NZ_CP121128.1 See Comparison
NZ_CP121144.1 See Comparison
NZ_CP121142.1 See Comparison
NZ_CP121130.1 See Comparison
NZ_CP089885.1 See Comparison
NZ_CP097412.1 See Comparison
NZ_CP103730.1 See Comparison
OX030699.1 See Comparison
NZ_CP097416.1 See Comparison
OW968042.1 See Comparison
OW848863.1 See Comparison
OW968148.1 See Comparison
OW848970.1 See Comparison
OW848958.1 See Comparison
OW848947.1 See Comparison
OW848940.1 See Comparison
OW848909.1 See Comparison
NZ_CP086468.1 See Comparison
OW849326.1 See Comparison
OW849024.1 See Comparison
OW849017.1 See Comparison
NZ_CP086459.1 See Comparison
CP067676.1 See Comparison
NZ_CP086465.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP133845.1 See Comparison
NZ_CP073628.1 See Comparison
NZ_CP129800.1 See Comparison
CP146574.1 See Comparison
CP155720.1 See Comparison
NZ_CP065168.1 See Comparison
CP052441.1 See Comparison
NZ_CP121134.1 See Comparison
NZ_CP121132.1 See Comparison
NZ_CP121146.1 See Comparison
NZ_CP121138.1 See Comparison
NZ_CP121136.1 See Comparison
NZ_CP121128.1 See Comparison
NZ_CP121144.1 See Comparison
NZ_CP121142.1 See Comparison
NZ_CP121130.1 See Comparison
NZ_CP089885.1 See Comparison
NZ_CP103730.1 See Comparison
OX030699.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore