Plasmid NZ_CP116150.1

Sequence

Nucleotide Information

Accession NZ_CP116150.1
Description Escherichia coli strain DETEC-P622 plasmid pDETEC58, complete sequence
Source refseq
Topology circular
Length 4087 bp
GC Content 0.50 %
Created at NCBI Jan. 25, 2023



Assembly

Genome Data Information

Accession GCF_027944835.1
Assembly Coverage 10


Biosample

Curated Collection Information
Accession 31988467

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Guangzhou
Original Query Type name
Coordinates (Lat/Lon) 23.13/113.26
Address China,Guangzhou

ECOSYSTEM
Original Query whole organism,ICU patient rectal swab
Classification disease,gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP091760.1 See Comparison
CP082460.1 See Comparison
NZ_CP018966.1 See Comparison
NZ_CP010878.1 See Comparison
NZ_OZ040271.1 See Comparison
NZ_CP135704.1 See Comparison
NZ_CP128949.1 See Comparison
NZ_CP128911.1 See Comparison
NZ_CP128891.1 See Comparison
NZ_CP124458.1 See Comparison
NZ_CP023832.1 See Comparison
NZ_OZ039050.1 See Comparison
NZ_CP147530.1 See Comparison
NZ_CP147527.1 See Comparison
NZ_CP145147.1 See Comparison
NZ_LC438464.1 See Comparison
NZ_AP027839.1 See Comparison
NZ_CP069562.1 See Comparison
NZ_CP070591.1 See Comparison
NZ_MN689939.1 See Comparison
NZ_AP022035.1 See Comparison
NZ_AP022002.1 See Comparison
NZ_CP116186.1 See Comparison
NZ_CP010878.1 See Comparison
NZ_CP091760.1 See Comparison
CP082460.1 See Comparison
NZ_CP018966.1 See Comparison
AP026486.1 See Comparison
AP026482.1 See Comparison
NZ_OX030706.1 See Comparison
NZ_OZ040271.1 See Comparison
NZ_CP023832.1 See Comparison
NZ_CP135704.1 See Comparison
NZ_CP128949.1 See Comparison
NZ_CP128911.1 See Comparison
NZ_CP128891.1 See Comparison
NZ_CP124458.1 See Comparison
NZ_OZ039050.1 See Comparison
NZ_CP147530.1 See Comparison
NZ_CP147527.1 See Comparison
NZ_CP145147.1 See Comparison
NZ_CP069562.1 See Comparison
NZ_AP027839.1 See Comparison
NZ_CP070591.1 See Comparison
NZ_LC438464.1 See Comparison
NZ_AP022035.1 See Comparison
NZ_MN689939.1 See Comparison
NZ_AP022002.1 See Comparison
NZ_CP116186.1 See Comparison
NZ_LC438464.1 See Comparison
AP026486.1 See Comparison
AP026482.1 See Comparison
NZ_OX030706.1 See Comparison
NZ_CP091760.1 See Comparison
CP082460.1 See Comparison
NZ_CP018966.1 See Comparison
NZ_CP124458.1 See Comparison
NZ_OZ040271.1 See Comparison
NZ_OZ039050.1 See Comparison
NZ_CP145147.1 See Comparison
NZ_CP010878.1 See Comparison
NZ_CP023832.1 See Comparison
NZ_CP135704.1 See Comparison
NZ_CP128949.1 See Comparison
NZ_CP128911.1 See Comparison
NZ_CP128891.1 See Comparison
NZ_CP147530.1 See Comparison
NZ_CP147527.1 See Comparison
NZ_AP027839.1 See Comparison
NZ_CP069562.1 See Comparison
NZ_CP070591.1 See Comparison
NZ_AP022035.1 See Comparison
NZ_MN689939.1 See Comparison
NZ_AP022002.1 See Comparison
NZ_CP116186.1 See Comparison
NZ_CP091760.1 See Comparison
NZ_CP116150.1 See Comparison
AP026486.1 See Comparison
AP026482.1 See Comparison
NZ_OX030706.1 See Comparison
NZ_CP145147.1 See Comparison
NZ_CP018966.1 See Comparison
NZ_OZ040271.1 See Comparison
NZ_OZ039050.1 See Comparison
CP082460.1 See Comparison
NZ_CP010878.1 See Comparison
NZ_CP023832.1 See Comparison
NZ_CP135704.1 See Comparison
NZ_CP128949.1 See Comparison
NZ_CP128911.1 See Comparison
NZ_CP128891.1 See Comparison
NZ_CP124458.1 See Comparison
NZ_CP147530.1 See Comparison
NZ_CP147527.1 See Comparison
NZ_CP069562.1 See Comparison
NZ_AP027839.1 See Comparison
NZ_LC438464.1 See Comparison
NZ_CP070591.1 See Comparison
NZ_MN689939.1 See Comparison
NZ_AP022035.1 See Comparison
NZ_AP022002.1 See Comparison
NZ_CP116186.1 See Comparison
NZ_CP124458.1 See Comparison
NZ_OX030706.1 See Comparison
NZ_CP091760.1 See Comparison
CP082460.1 See Comparison
NZ_CP018966.1 See Comparison
NZ_CP128949.1 See Comparison
AP026486.1 See Comparison
AP026482.1 See Comparison
NZ_CP010878.1 See Comparison
NZ_CP023832.1 See Comparison
NZ_CP135704.1 See Comparison
NZ_CP128911.1 See Comparison
NZ_CP128891.1 See Comparison
NZ_CP147530.1 See Comparison
NZ_OZ040271.1 See Comparison
NZ_OZ039050.1 See Comparison
NZ_CP147527.1 See Comparison
NZ_AP027839.1 See Comparison
NZ_CP145147.1 See Comparison
AP026486.1 See Comparison
NZ_LC438464.1 See Comparison
NZ_CP069562.1 See Comparison
NZ_AP022035.1 See Comparison
NZ_AP022002.1 See Comparison
NZ_CP116186.1 See Comparison
NZ_CP070591.1 See Comparison
NZ_MN689939.1 See Comparison
AP026482.1 See Comparison
NZ_CP091760.1 See Comparison
NZ_OX030706.1 See Comparison
NZ_CP018966.1 See Comparison
CP082460.1 See Comparison
NZ_CP023832.1 See Comparison
NZ_CP010878.1 See Comparison
NZ_CP128949.1 See Comparison
NZ_CP135704.1 See Comparison
NZ_CP128911.1 See Comparison
NZ_CP128891.1 See Comparison
NZ_CP124458.1 See Comparison
NZ_CP070591.1 See Comparison
NZ_CP147530.1 See Comparison
NZ_CP147527.1 See Comparison
NZ_AP027839.1 See Comparison
NZ_OZ040271.1 See Comparison
NZ_OZ039050.1 See Comparison
NZ_CP145147.1 See Comparison
NZ_LC438464.1 See Comparison
NZ_AP022035.1 See Comparison
NZ_CP069562.1 See Comparison
NZ_MN689939.1 See Comparison
NZ_OX030706.1 See Comparison
NZ_AP022002.1 See Comparison
NZ_CP116186.1 See Comparison
AP026486.1 See Comparison
AP026482.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore