Plasmid NZ_CP023895.1

Sequence

Nucleotide Information

Accession	NZ_CP023895.1
Description	Escherichia coli strain FDAARGOS_433 plasmid unnamed2, complete sequence
Source	refseq
Topology	circular
Length	91648 bp
GC Content	0.53 %
Created at NCBI	Oct. 20, 2017

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_002589795.1
Assembly Coverage	16.09

Biosample

Curated Collection Information

Accession	7312477

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Canada,BC
Original Query Type	name
Coordinates (Lat/Lon)	55.00/-125.00
Address	Canada,BC

ECOSYSTEM

Original Query	Homo sapiens,rectal
Classification	fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	Screening
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_MZ892875.1	See Comparison
NZ_CP023895.1	See Comparison
NZ_CP095681.1	See Comparison
NZ_CP095683.1	See Comparison
NZ_AP018144.1	See Comparison
NZ_CP127512.1	See Comparison
NZ_AP023236.1	See Comparison
NZ_KT725789.1	See Comparison
NZ_KT725788.1	See Comparison
LC744443.1	See Comparison
LC744515.1	See Comparison
LC744512.1	See Comparison
LC744497.1	See Comparison
NZ_AP023434.1	See Comparison
LC744491.1	See Comparison
LC744488.1	See Comparison
LC744487.1	See Comparison
LC744480.1	See Comparison
LC744475.1	See Comparison
LC744473.1	See Comparison
LC744470.1	See Comparison
LC744467.1	See Comparison
LC744463.1	See Comparison
LC744449.1	See Comparison
NZ_CP095669.1	See Comparison
NZ_CP095655.1	See Comparison
NZ_CP095670.1	See Comparison
NZ_CP095626.1	See Comparison
NZ_CP095621.1	See Comparison
NZ_CP095606.1	See Comparison
NZ_CP095576.1	See Comparison
NZ_CP095622.1	See Comparison
NZ_CP095601.1	See Comparison
NZ_CP095611.1	See Comparison
NZ_CP095663.1	See Comparison
NZ_CP095648.1	See Comparison
NZ_CP095681.1	See Comparison
NZ_CP095610.1	See Comparison
NZ_CP095624.1	See Comparison
NZ_MZ892875.1	See Comparison
NZ_CP095683.1	See Comparison
NZ_KT725789.1	See Comparison
NZ_CP127512.1	See Comparison
NZ_AP023236.1	See Comparison
NZ_KT725788.1	See Comparison
LC744497.1	See Comparison
NZ_AP018144.1	See Comparison
LC744491.1	See Comparison
LC744488.1	See Comparison
LC744487.1	See Comparison
LC744480.1	See Comparison
LC744515.1	See Comparison
LC744443.1	See Comparison
LC744475.1	See Comparison
LC744512.1	See Comparison
LC744473.1	See Comparison
LC744470.1	See Comparison
LC744467.1	See Comparison
LC744463.1	See Comparison
LC744449.1	See Comparison
NZ_CP095681.1	See Comparison
NZ_CP095624.1	See Comparison
NZ_MZ892875.1	See Comparison
NZ_AP023434.1	See Comparison
NZ_CP095669.1	See Comparison
NZ_CP095655.1	See Comparison
NZ_CP095670.1	See Comparison
NZ_CP095626.1	See Comparison
NZ_CP095621.1	See Comparison
NZ_CP095606.1	See Comparison
NZ_CP095576.1	See Comparison
NZ_CP095622.1	See Comparison
NZ_CP095601.1	See Comparison
NZ_CP095611.1	See Comparison
NZ_CP095663.1	See Comparison
NZ_CP095648.1	See Comparison
NZ_CP095610.1	See Comparison
NZ_CP095683.1	See Comparison
NZ_KT725789.1	See Comparison
NZ_CP127512.1	See Comparison
NZ_AP023236.1	See Comparison
NZ_KT725788.1	See Comparison
NZ_AP018144.1	See Comparison
NZ_CP095669.1	See Comparison
LC744515.1	See Comparison
LC744512.1	See Comparison
LC744497.1	See Comparison
LC744491.1	See Comparison
LC744488.1	See Comparison
LC744487.1	See Comparison
LC744480.1	See Comparison
LC744475.1	See Comparison
LC744473.1	See Comparison
LC744470.1	See Comparison
LC744467.1	See Comparison
LC744463.1	See Comparison
LC744449.1	See Comparison
LC744443.1	See Comparison
NZ_AP023434.1	See Comparison
NZ_CP095655.1	See Comparison
NZ_CP095670.1	See Comparison
NZ_CP095626.1	See Comparison
NZ_CP095621.1	See Comparison
NZ_CP095606.1	See Comparison
NZ_CP095624.1	See Comparison
NZ_CP095576.1	See Comparison
NZ_CP095622.1	See Comparison
NZ_CP095601.1	See Comparison
NZ_CP095611.1	See Comparison
NZ_CP095663.1	See Comparison
NZ_CP095648.1	See Comparison
NZ_CP095610.1	See Comparison
NZ_CP095681.1	See Comparison
NZ_MZ892875.1	See Comparison
NZ_CP095683.1	See Comparison
LC744515.1	See Comparison
NZ_CP127512.1	See Comparison
NZ_AP023236.1	See Comparison
NZ_KT725789.1	See Comparison
NZ_KT725788.1	See Comparison
NZ_AP018144.1	See Comparison
LC744512.1	See Comparison
LC744497.1	See Comparison
LC744491.1	See Comparison
LC744488.1	See Comparison
LC744487.1	See Comparison
LC744480.1	See Comparison
LC744475.1	See Comparison
LC744473.1	See Comparison
LC744470.1	See Comparison
LC744467.1	See Comparison
LC744463.1	See Comparison
LC744449.1	See Comparison
LC744443.1	See Comparison
NZ_AP023236.1	See Comparison
NZ_AP023434.1	See Comparison
NZ_CP095670.1	See Comparison
NZ_CP095626.1	See Comparison
NZ_CP095621.1	See Comparison
NZ_CP095606.1	See Comparison
NZ_CP095576.1	See Comparison
NZ_CP095622.1	See Comparison
NZ_CP095601.1	See Comparison
NZ_CP095611.1	See Comparison
NZ_CP095663.1	See Comparison
NZ_CP095648.1	See Comparison
NZ_CP095610.1	See Comparison
NZ_CP127512.1	See Comparison
NZ_CP095669.1	See Comparison
NZ_CP095655.1	See Comparison
NZ_CP095624.1	See Comparison
NZ_MZ892875.1	See Comparison
NZ_CP095681.1	See Comparison
NZ_CP095683.1	See Comparison
NZ_KT725789.1	See Comparison
NZ_KT725788.1	See Comparison
NZ_AP018144.1	See Comparison
NZ_AP018144.1	See Comparison
LC744515.1	See Comparison
LC744512.1	See Comparison
LC744497.1	See Comparison
NZ_CP095670.1	See Comparison
NZ_CP095626.1	See Comparison
NZ_CP095621.1	See Comparison
NZ_CP095606.1	See Comparison
NZ_CP095576.1	See Comparison
NZ_CP095622.1	See Comparison
NZ_CP095601.1	See Comparison
NZ_CP095611.1	See Comparison
NZ_CP095663.1	See Comparison
NZ_CP095648.1	See Comparison
NZ_CP095610.1	See Comparison
NZ_CP095624.1	See Comparison
NZ_CP095681.1	See Comparison
NZ_CP095683.1	See Comparison
NZ_CP127512.1	See Comparison
NZ_KT725789.1	See Comparison
NZ_KT725788.1	See Comparison
LC744491.1	See Comparison
LC744488.1	See Comparison
LC744487.1	See Comparison
LC744480.1	See Comparison
LC744475.1	See Comparison
LC744473.1	See Comparison
LC744470.1	See Comparison
LC744467.1	See Comparison
LC744463.1	See Comparison
LC744449.1	See Comparison
LC744443.1	See Comparison
NZ_AP023434.1	See Comparison
NZ_CP095669.1	See Comparison
NZ_CP095655.1	See Comparison
NZ_MZ892875.1	See Comparison
NZ_CP095626.1	See Comparison
NZ_AP023236.1	See Comparison
LC744515.1	See Comparison
LC744512.1	See Comparison
LC744497.1	See Comparison
LC744491.1	See Comparison
LC744488.1	See Comparison
LC744487.1	See Comparison
LC744480.1	See Comparison
LC744475.1	See Comparison
LC744473.1	See Comparison
LC744470.1	See Comparison
LC744467.1	See Comparison
LC744463.1	See Comparison
LC744449.1	See Comparison
LC744443.1	See Comparison
NZ_AP023434.1	See Comparison
NZ_CP095621.1	See Comparison
NZ_CP095606.1	See Comparison
NZ_CP095576.1	See Comparison
NZ_CP095622.1	See Comparison
NZ_CP095601.1	See Comparison
NZ_CP095611.1	See Comparison
NZ_CP095663.1	See Comparison
NZ_CP095648.1	See Comparison
NZ_CP095669.1	See Comparison
NZ_CP095655.1	See Comparison
NZ_CP095610.1	See Comparison
NZ_CP095670.1	See Comparison
NZ_CP095624.1	See Comparison
NZ_AP018144.1	See Comparison
NZ_MZ892875.1	See Comparison
NZ_CP095681.1	See Comparison
NZ_CP095683.1	See Comparison
NZ_CP127512.1	See Comparison
NZ_AP023236.1	See Comparison
NZ_KT725789.1	See Comparison
NZ_KT725788.1	See Comparison
NZ_AP023434.1	See Comparison
LC744515.1	See Comparison
LC744512.1	See Comparison
LC744497.1	See Comparison
LC744491.1	See Comparison
LC744488.1	See Comparison
LC744487.1	See Comparison
LC744480.1	See Comparison
LC744475.1	See Comparison
LC744473.1	See Comparison
LC744470.1	See Comparison
LC744467.1	See Comparison
LC744463.1	See Comparison
LC744449.1	See Comparison
LC744443.1	See Comparison
NZ_CP095655.1	See Comparison
NZ_CP095670.1	See Comparison
NZ_CP095669.1	See Comparison
NZ_CP095606.1	See Comparison
NZ_CP095576.1	See Comparison
NZ_CP095626.1	See Comparison
NZ_CP095621.1	See Comparison
NZ_CP095622.1	See Comparison
NZ_CP095610.1	See Comparison
NZ_CP095601.1	See Comparison
NZ_CP095611.1	See Comparison
NZ_CP095663.1	See Comparison
NZ_CP095648.1	See Comparison
NZ_CP095624.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2