Plasmid NZ_CP054360.1

Sequence

Nucleotide Information

Accession NZ_CP054360.1
Description Escherichia coli strain SCU-172 plasmid pSCU-172-7, complete sequence
Source refseq
Topology circular
Length 2311 bp
GC Content 0.41 %
Created at NCBI June 12, 2020



Assembly

Genome Data Information

Accession GCF_013315695.1
Assembly Coverage 78


Biosample

Curated Collection Information

Accession 14943545

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,California
Original Query Type name
Coordinates (Lat/Lon) 36.70/-118.76
Address USA,California

ECOSYSTEM
Original Query Homo sapiens,whole organism,rectal swab from healthy college student
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization




Similar Plasmids

based on Mash distance


Plasmid Visualization


SourceElement Name Display Sequence Favorite
PGAGreplication/maintenance protein RepLcopy
PGAGmobAcopy
MOB-typerCol(MG828)copy
SourceElement NameDisplaySequenceFavorite
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconNC_008486Col(MG828)67326minus87.2181003.19e-77294
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
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