Plasmid NZ_CP054360.1
Sequence
Nucleotide Information
Accession | NZ_CP054360.1 |
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Description | Escherichia coli strain SCU-172 plasmid pSCU-172-7, complete sequence |
Source | refseq |
Topology | circular |
Length | 2311 bp |
GC Content | 0.41 % |
Created at NCBI | June 12, 2020 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Escherichia coli (562) |
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Lineage
Superkingdom | Bacteria (2) |
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Phylum | Pseudomonadota (1224) |
Class | Gammaproteobacteria (1236) |
Order | Enterobacterales (91347) |
Family | Enterobacteriaceae (543) |
Genus | Escherichia (561) |
Species | Escherichia_coli (562) |
Strain |
Biosample
Curated Collection Information
Accession | 14943545 |
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PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query | USA,California |
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Original Query Type | name |
Coordinates (Lat/Lon) | 36.70/-118.76 |
Address | USA,California |
ECOSYSTEM
Original Query | Homo sapiens,whole organism,rectal swab from healthy college student |
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Classification | gastrointestinal_system,host_associated,rectal |
Host-associated Taxon |
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DISEASE
Original Query | None |
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DOID/SYMP |
Visualization
Plasmids from same Biosample
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
Source | Element Name | Display | Sequence | Favorite |
---|---|---|---|---|
PGAG | replication/maintenance protein RepL | copy | ||
PGAG | mobA | copy | ||
MOB-typer | Col(MG828) | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 3 of 3 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
---|---|---|---|---|---|---|---|---|---|---|
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
replicon | NC_008486 | Col(MG828) | 67 | 326 | minus | 87.218 | 100 | 3.19e-77 | 294 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 1 of 1 entry