Plasmid NZ_CP070081.1
Sequence
Nucleotide Information
Accession | NZ_CP070081.1 |
---|---|
Description | Escherichia coli strain FDAARGOS_1371 plasmid unnamed5, complete sequence |
Source | refseq |
Topology | circular |
Length | 2101 bp |
GC Content | 0.47 % |
Created at NCBI | Feb. 23, 2021 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Escherichia coli (562) |
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Lineage
Superkingdom | Bacteria (2) |
---|---|
Phylum | Pseudomonadota (1224) |
Class | Gammaproteobacteria (1236) |
Order | Enterobacterales (91347) |
Family | Enterobacteriaceae (543) |
Genus | Escherichia (561) |
Species | Escherichia_coli (562) |
Strain |
Biosample
Curated Collection Information
Accession | 16357513 |
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PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query | USA,WA |
---|---|
Original Query Type | name |
Coordinates (Lat/Lon) | 47.29/-120.21 |
Address | USA,WA |
ECOSYSTEM
Original Query | Homo sapiens |
---|---|
Classification | host_associated |
Host-associated Taxon |
|
DISEASE
Original Query | None |
---|---|
DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
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Sequence
- Accession: NZ_CP070099.1
- Description: Escherichia coli strain FDAARGOS_1370 plasmid unnamed5, complete sequence
- Source: refseq
- Created at NCBI: Feb. 23, 2021
-
Host Taxonomy
Assigned Host: Escherichia coli (562)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Escherichia (561)
- Species : Escherichia_coli (562)
- Strain:
-
Biosample
Accession: 16357512 - GEOGRAPHICAL INFORMATION
- Original Query: USA,WA
- Original Query Type: name
- Address: USA,WA
- Coordinates (Lat/Lon): 47.29/-120.21
- ECOSYSTEM
- Original Query: Homo sapiens
- Classification: host_associated
- Host-associated Taxon:
- Homo sapiens (9606)
Visualization
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
Source | Element Name | Display | Sequence | Favorite |
---|---|---|---|---|
PGAG | protein rep | copy | ||
PGAG | hypothetical protein | copy | ||
MOB-typer | Col(BS512) | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 3 of 3 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
---|---|---|---|---|---|---|---|
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
---|---|---|---|---|---|---|---|---|---|---|
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
replicon | NC_010656 | Col(BS512) | 1692 | 1924 | plus | 100 | 100 | 2.05e-118 | 431 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 1 of 1 entry
Detected typing markers by plasmidfinder
NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
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NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |