Plasmid NZ_CP058660.1
Sequence
Nucleotide Information
Accession | NZ_CP058660.1 |
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Description | Escherichia coli strain WCHEC035125 plasmid p3_035125, complete sequence |
Source | refseq |
Topology | circular |
Length | 2101 bp |
GC Content | 0.47 % |
Created at NCBI | July 22, 2020 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Escherichia coli (562) |
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Lineage
Superkingdom | Bacteria (2) |
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Phylum | Pseudomonadota (1224) |
Class | Gammaproteobacteria (1236) |
Order | Enterobacterales (91347) |
Family | Enterobacteriaceae (543) |
Genus | Escherichia (561) |
Species | Escherichia_coli (562) |
Strain |
Biosample
Curated Collection Information
Accession | 9202771 |
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PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query | China,Chengdu,Sichuan |
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Original Query Type | name |
Coordinates (Lat/Lon) | 30.64/104.07 |
Address | China,Chengdu,Sichuan |
ECOSYSTEM
Original Query | Pure Culture,sewage |
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Classification | cell_culture,sewage,wastewater |
Host-associated Taxon |
DISEASE
Original Query | None |
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DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
Source | Element Name | Display | Sequence | Favorite |
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PGAG | protein rep | copy | ||
PGAG | hypothetical protein | copy | ||
MOB-typer | Col(BS512) | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 3 of 3 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
---|---|---|---|---|---|---|---|---|---|---|
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
replicon | NC_010656 | Col(BS512) | 1496 | 1728 | minus | 100 | 100 | 2.05e-118 | 431 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 1 of 1 entry
Detected typing markers by plasmidfinder
NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
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NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |