Plasmid NZ_CP049842.1

Sequence

Nucleotide Information

Accession NZ_CP049842.1
Description Escherichia coli strain UPEC-455U/190220 plasmid pEcoUTI1b, complete sequence
Source refseq
Topology circular
Length 2113 bp
GC Content 0.47 %
Created at NCBI Aug. 4, 2021



Assembly

Genome Data Information

Accession GCF_019443605.1
Assembly Coverage 286.563


Biosample

Curated Collection Information
Accession 14277528

PLASMID INFORMATION
BIOSAMPLE_pathotype Escherichia coli, UPEC

GEOGRAPHICAL INFORMATION
Original Query Mexico,Mexico City
Original Query Type name
Coordinates (Lat/Lon) 19.43/-99.13
Address Mexico,Mexico City

ECOSYSTEM
Original Query Homo sapiens,Biopsy of human bladder epithelium,bladder epithelial biopsy from 60-year-old female patient with recurrent urinary tract infection
Classification bladder,disease,host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 60 years
Host-associated Sex female

DISEASE
Original Query Recurrent urinary tract infection,chronic disease,chronic disease,chronic disease
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



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NZ_AP023223.2 See Comparison
NZ_CP067254.1 See Comparison
NC_016824.1 See Comparison
NZ_CP069674.1 See Comparison
NZ_CP008719.1 See Comparison
NZ_CP011141.1 See Comparison
NC_009347.1 See Comparison
AP027720.1 See Comparison
NZ_CP034961.1 See Comparison
NZ_CP033766.1 See Comparison
NZ_CP030115.1 See Comparison
NZ_CP029366.1 See Comparison
NZ_CP023648.1 See Comparison
NZ_CP029105.1 See Comparison
NZ_CP027132.1 See Comparison
NZ_CP023902.1 See Comparison
NZ_CP135222.1 See Comparison
NZ_CP135725.1 See Comparison
NZ_CP135663.1 See Comparison
NZ_CP135229.1 See Comparison
NZ_CP135216.1 See Comparison
NZ_CP058899.1 See Comparison
NZ_CP059338.1 See Comparison
NZ_CP115347.1 See Comparison
NZ_CP058924.1 See Comparison
NZ_CP115323.1 See Comparison
NZ_CP059341.1 See Comparison
NZ_CP058920.1 See Comparison
NZ_AP027977.1 See Comparison
NZ_CP082051.1 See Comparison
NZ_CP082065.1 See Comparison
NZ_AP027984.1 See Comparison
NZ_CP124383.1 See Comparison
NZ_CP151675.1 See Comparison
NZ_CP149251.1 See Comparison
NZ_CP151356.1 See Comparison
NZ_CP151401.1 See Comparison
NZ_CP151310.1 See Comparison
NZ_CP145654.1 See Comparison
NZ_AP027842.1 See Comparison
NZ_AP027499.1 See Comparison
NZ_CP142952.1 See Comparison
NZ_CP124404.1 See Comparison
CP125070.1 See Comparison
CP125026.1 See Comparison
CP125019.1 See Comparison
CP125058.1 See Comparison
CP125032.1 See Comparison
CP125052.1 See Comparison
NZ_CP123236.1 See Comparison
NZ_OZ038810.1 See Comparison
NZ_OZ040272.1 See Comparison
NZ_CP146293.2 See Comparison
NZ_CP151342.1 See Comparison
NZ_CP151381.1 See Comparison
NZ_CP151363.1 See Comparison
NZ_CP145626.1 See Comparison
NZ_CP145644.1 See Comparison
NZ_CP145688.1 See Comparison
NZ_CP054218.1 See Comparison
CP056791.1 See Comparison
NZ_CP058660.1 See Comparison
NZ_CP058655.1 See Comparison
NZ_CP058665.1 See Comparison
CP054463.1 See Comparison
NZ_CP054361.1 See Comparison
CP054341.1 See Comparison
CP054324.1 See Comparison
NZ_CP043411.1 See Comparison
CP052212.1 See Comparison
NZ_AP022657.1 See Comparison
NZ_CP140509.1 See Comparison
NZ_CP048319.1 See Comparison
NZ_CP050362.1 See Comparison
NZ_CP048370.1 See Comparison
NZ_CP048366.1 See Comparison
NZ_CP046422.1 See Comparison
NZ_CP045788.1 See Comparison
NZ_CP070444.1 See Comparison
NZ_CP070424.1 See Comparison
NZ_CP070031.1 See Comparison
NZ_CP070458.1 See Comparison
NZ_CP069869.1 See Comparison
NZ_CP064850.1 See Comparison
NZ_CP070004.1 See Comparison
NZ_CP070081.1 See Comparison
NZ_CP070099.1 See Comparison
NZ_LR890540.1 See Comparison
NZ_LR890414.1 See Comparison
NZ_CP061112.1 See Comparison
NZ_AP022170.1 See Comparison
NZ_CP063007.1 See Comparison
NZ_CP060427.1 See Comparison
NZ_CP116105.1 See Comparison
NZ_AP022212.1 See Comparison
NZ_AP022054.1 See Comparison
NZ_AP022104.1 See Comparison
NZ_AP021968.1 See Comparison
NZ_CP102700.1 See Comparison
CP117209.1 See Comparison
NZ_OP242305.1 See Comparison
NZ_CP116922.1 See Comparison
NZ_CP116193.1 See Comparison
NZ_CP116196.1 See Comparison
NZ_CP116134.1 See Comparison
NZ_CP116143.1 See Comparison
NZ_CP116122.1 See Comparison
NZ_CP101231.1 See Comparison
NZ_CP061366.1 See Comparison
NZ_CP060119.1 See Comparison
NZ_CP103565.1 See Comparison
NZ_CP103625.1 See Comparison
NZ_CP103476.1 See Comparison
NZ_CP101208.1 See Comparison
NZ_OX030736.1 See Comparison
NZ_CP043278.1 See Comparison
NZ_CP069211.1 See Comparison
NZ_CP060960.1 See Comparison
NZ_CP060945.1 See Comparison
NZ_CP091663.1 See Comparison
NZ_CP091711.1 See Comparison
NZ_CP091690.1 See Comparison
NZ_CP054163.1 See Comparison
NZ_CP091697.1 See Comparison
CP067709.1 See Comparison
NZ_CP091990.1 See Comparison
NZ_CP059133.1 See Comparison
NZ_CP083080.1 See Comparison
NZ_CP085067.1 See Comparison
NZ_CP049856.1 See Comparison
NZ_CP079691.1 See Comparison
NZ_CP076347.1 See Comparison
NZ_CP076316.1 See Comparison
MW363524.1 See Comparison
NZ_CP072472.1 See Comparison
NZ_CP067254.1 See Comparison
NZ_CP008719.1 See Comparison
NZ_CP011141.1 See Comparison
NC_016824.1 See Comparison
CP077383.1 See Comparison
CP077358.1 See Comparison
CP077346.1 See Comparison
CP077278.1 See Comparison
CP077284.1 See Comparison
CP077255.1 See Comparison
CP077227.1 See Comparison
NZ_CP053255.2 See Comparison
NZ_AP023234.2 See Comparison
NZ_AP023223.2 See Comparison
NZ_CP069674.1 See Comparison
NZ_CP079616.1 See Comparison
NZ_CP023902.1 See Comparison
NZ_CP034961.1 See Comparison
NZ_CP030115.1 See Comparison
NZ_CP029366.1 See Comparison
NC_009347.1 See Comparison
NZ_CP023648.1 See Comparison
NZ_CP033766.1 See Comparison
NZ_CP027132.1 See Comparison
NZ_CP058899.1 See Comparison
NZ_CP029105.1 See Comparison
AP027720.1 See Comparison
NZ_CP135725.1 See Comparison
NZ_CP135663.1 See Comparison
NZ_CP135222.1 See Comparison
NZ_CP135229.1 See Comparison
NZ_CP135216.1 See Comparison
NZ_CP059338.1 See Comparison
NZ_CP115347.1 See Comparison
NZ_CP058924.1 See Comparison
NZ_CP115323.1 See Comparison
NZ_CP059341.1 See Comparison
NZ_CP058920.1 See Comparison
NZ_CP082051.1 See Comparison
NZ_CP082065.1 See Comparison
NZ_AP027977.1 See Comparison
NZ_AP027984.1 See Comparison
NZ_CP151675.1 See Comparison
NZ_CP124404.1 See Comparison
CP125070.1 See Comparison
CP125026.1 See Comparison
CP125019.1 See Comparison
CP125058.1 See Comparison
CP125032.1 See Comparison
CP125052.1 See Comparison
NZ_CP123236.1 See Comparison
NZ_OZ038810.1 See Comparison
NZ_OZ040272.1 See Comparison
NZ_CP146293.2 See Comparison
NZ_CP124383.1 See Comparison
NZ_CP149251.1 See Comparison
NZ_CP151356.1 See Comparison
NZ_CP151401.1 See Comparison
NZ_CP151310.1 See Comparison
NZ_CP151342.1 See Comparison
NZ_CP151381.1 See Comparison
NZ_CP151363.1 See Comparison
NZ_CP142952.1 See Comparison
NZ_CP145626.1 See Comparison
NZ_CP145644.1 See Comparison
NZ_CP145688.1 See Comparison
NZ_CP145654.1 See Comparison
NZ_AP027842.1 See Comparison
CP054463.1 See Comparison
NZ_AP027499.1 See Comparison
CP056791.1 See Comparison
NZ_CP058660.1 See Comparison
NZ_CP058655.1 See Comparison
NZ_CP058665.1 See Comparison
NZ_CP054218.1 See Comparison
NZ_CP140509.1 See Comparison
NZ_CP054361.1 See Comparison
CP054341.1 See Comparison
CP054324.1 See Comparison
NZ_CP043411.1 See Comparison
NZ_CP102700.1 See Comparison
NZ_AP022657.1 See Comparison
NZ_CP050362.1 See Comparison
NZ_CP048370.1 See Comparison
NZ_CP048366.1 See Comparison
NZ_CP046422.1 See Comparison
NZ_CP070444.1 See Comparison
NZ_CP070424.1 See Comparison
NZ_CP070458.1 See Comparison
NZ_CP070031.1 See Comparison
NZ_CP069869.1 See Comparison
NZ_CP070004.1 See Comparison
NZ_CP070081.1 See Comparison
NZ_CP070099.1 See Comparison
NZ_LR890540.1 See Comparison
NZ_LR890414.1 See Comparison
NZ_CP061112.1 See Comparison
NZ_AP022170.1 See Comparison
NZ_AP022212.1 See Comparison
NZ_AP022054.1 See Comparison
NZ_AP022104.1 See Comparison
NZ_AP021968.1 See Comparison
CP052212.1 See Comparison
NZ_CP048319.1 See Comparison
NZ_CP045788.1 See Comparison
NZ_CP064850.1 See Comparison
NZ_CP063007.1 See Comparison
NZ_CP060427.1 See Comparison
CP117209.1 See Comparison
NZ_OP242305.1 See Comparison
NZ_CP116922.1 See Comparison
NZ_CP060119.1 See Comparison
NZ_CP116193.1 See Comparison
NZ_CP116196.1 See Comparison
NZ_CP116134.1 See Comparison
NZ_CP116143.1 See Comparison
NZ_CP116105.1 See Comparison
NZ_CP116122.1 See Comparison
NZ_CP061366.1 See Comparison
NZ_CP103565.1 See Comparison
NZ_CP101231.1 See Comparison
NZ_CP101208.1 See Comparison
NZ_OX030736.1 See Comparison
NZ_CP103625.1 See Comparison
NZ_CP103476.1 See Comparison
NZ_CP083080.1 See Comparison
NZ_CP060945.1 See Comparison
NZ_CP091711.1 See Comparison
NZ_CP091690.1 See Comparison
NZ_CP091697.1 See Comparison
NZ_CP091663.1 See Comparison
CP067709.1 See Comparison
NZ_CP069211.1 See Comparison
NZ_CP060960.1 See Comparison
NZ_CP043278.1 See Comparison
NZ_CP091990.1 See Comparison
NZ_CP054163.1 See Comparison
NZ_CP059133.1 See Comparison
NZ_CP049856.1 See Comparison
NZ_CP079691.1 See Comparison
NZ_CP079616.1 See Comparison
NZ_CP085067.1 See Comparison
CP077383.1 See Comparison
CP077346.1 See Comparison
CP077278.1 See Comparison
CP077284.1 See Comparison
CP077255.1 See Comparison
CP077227.1 See Comparison
CP077358.1 See Comparison
NZ_CP076316.1 See Comparison
MW363524.1 See Comparison
NZ_CP076347.1 See Comparison
NZ_CP053255.2 See Comparison
NZ_AP023234.2 See Comparison
NZ_AP023223.2 See Comparison
NZ_CP069674.1 See Comparison
NZ_CP008719.1 See Comparison
NZ_CP011141.1 See Comparison
NZ_CP072472.1 See Comparison
NZ_CP067254.1 See Comparison
NC_009347.1 See Comparison
NC_016824.1 See Comparison
NZ_CP023648.1 See Comparison
NZ_CP034961.1 See Comparison
NZ_CP030115.1 See Comparison
NZ_CP033766.1 See Comparison
NZ_CP029366.1 See Comparison
NZ_CP027132.1 See Comparison
NZ_CP023902.1 See Comparison
AP027720.1 See Comparison
NZ_CP135725.1 See Comparison
NZ_CP135663.1 See Comparison
NZ_CP135222.1 See Comparison
NZ_CP135229.1 See Comparison
NZ_CP135216.1 See Comparison
NZ_CP124404.1 See Comparison
NZ_CP029105.1 See Comparison
NZ_CP058899.1 See Comparison
NZ_CP059338.1 See Comparison
NZ_CP115347.1 See Comparison
NZ_CP058924.1 See Comparison
NZ_CP115323.1 See Comparison
NZ_CP082051.1 See Comparison
NZ_CP082065.1 See Comparison
NZ_AP027977.1 See Comparison
NZ_AP027984.1 See Comparison
NZ_CP059341.1 See Comparison
NZ_CP058920.1 See Comparison
NZ_CP124383.1 See Comparison
CP125026.1 See Comparison
CP125019.1 See Comparison
CP125058.1 See Comparison
CP125032.1 See Comparison
CP125052.1 See Comparison
NZ_OZ038810.1 See Comparison
CP125070.1 See Comparison
NZ_OZ040272.1 See Comparison
NZ_CP146293.2 See Comparison
NZ_CP151675.1 See Comparison
NZ_CP149251.1 See Comparison
NZ_CP151356.1 See Comparison
NZ_CP151401.1 See Comparison
NZ_CP151310.1 See Comparison
NZ_CP151342.1 See Comparison
NZ_CP151381.1 See Comparison
NZ_CP151363.1 See Comparison
NZ_CP145626.1 See Comparison
NZ_CP145644.1 See Comparison
NZ_CP145654.1 See Comparison
NZ_CP145688.1 See Comparison
NZ_AP027842.1 See Comparison
NZ_CP140509.1 See Comparison
NZ_AP027499.1 See Comparison
NZ_CP142952.1 See Comparison
NZ_CP058660.1 See Comparison
CP056791.1 See Comparison
NZ_CP123236.1 See Comparison
NZ_CP058655.1 See Comparison
NZ_CP058665.1 See Comparison
NZ_CP054218.1 See Comparison
NZ_CP043411.1 See Comparison
CP054463.1 See Comparison
NZ_CP054361.1 See Comparison
CP054341.1 See Comparison
CP054324.1 See Comparison
CP052212.1 See Comparison
NZ_AP022657.1 See Comparison
NZ_CP069869.1 See Comparison
NZ_CP050362.1 See Comparison
NZ_CP048319.1 See Comparison
NZ_CP048370.1 See Comparison
NZ_CP048366.1 See Comparison
NZ_CP046422.1 See Comparison
NZ_CP070444.1 See Comparison
NZ_CP070458.1 See Comparison
NZ_CP045788.1 See Comparison
NZ_CP070424.1 See Comparison
NZ_CP070081.1 See Comparison
NZ_CP070004.1 See Comparison
NZ_CP070099.1 See Comparison
NZ_CP070031.1 See Comparison


Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_CP049856.1
    • Description: Escherichia coli strain UPEC-774U/190308 plasmid pEcoUTI1a, complete sequence
    • Source: refseq
    • Created at NCBI: Aug. 5, 2021

  • Host Taxonomy
    Assigned Host: Escherichia coli (562)
  • Biosample
    Accession: 14277526
  • GEOGRAPHICAL INFORMATION
    • Original Query: Mexico,Mexico City
    • Original Query Type: name
    • Address: Mexico,Mexico City
    • Coordinates (Lat/Lon): 19.43/-99.13
  • ECOSYSTEM
    • Original Query: Homo sapiens,Biopsy of human bladder epithelium,bladder epithelial biopsy from 50-year-old female patient with recurrent urinary tract infection
    • Classification: bladder,disease,host_associated,urinary_system
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Recurrent urinary tract infection,chronic disease,chronic disease,chronic disease
    • DOID/SYMP:
      • Urinary tract infection (DOID:0080784 )
        • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
      • Disease (DOID:4 )
        • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2