Plasmid NZ_CP097416.1

Sequence

Nucleotide Information

Accession NZ_CP097416.1
Description Klebsiella pneumoniae strain K163 plasmid unnamed1, complete sequence
Source refseq
Topology circular
Length 223898 bp
GC Content 0.52 %
Created at NCBI May 26, 2022



Assembly

Genome Data Information

Accession GCF_023538955.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 28404992

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 40.48N;3.69W
Original Query Type coordinates
Coordinates (Lat/Lon) 40.48/-3.69
Address Calle de Pedro Rico, La Paz, Fuencarral-El Pardo, Madrid, Community of Madrid, 28029, Spain

ECOSYSTEM
Original Query Homo sapiens,Human gut
Classification gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_LR890572.1 See Comparison
NZ_CP097412.1 See Comparison
OW969649.1 See Comparison
NZ_CP133845.1 See Comparison
CP067952.1 See Comparison
CP067676.1 See Comparison
CP024516.1 See Comparison
CP067676.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
NZ_LR890572.1 See Comparison
CP067952.1 See Comparison
CP146574.1 See Comparison
NZ_CP097412.1 See Comparison
NZ_CP097416.1 See Comparison
OW969649.1 See Comparison
NZ_CP129791.1 See Comparison
CP024516.1 See Comparison
NZ_CP133845.1 See Comparison
NZ_CP129800.1 See Comparison
NZ_LR890572.1 See Comparison
CP146574.1 See Comparison
CP067676.1 See Comparison
NZ_CP097412.1 See Comparison
OW969649.1 See Comparison
CP067952.1 See Comparison
CP024516.1 See Comparison
NZ_CP097412.1 See Comparison
NZ_CP133845.1 See Comparison
CP146574.1 See Comparison
NZ_LR890572.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
CP067676.1 See Comparison
OW969649.1 See Comparison
CP067952.1 See Comparison
CP024516.1 See Comparison
NZ_CP133845.1 See Comparison
CP067676.1 See Comparison
NZ_LR890572.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
CP146574.1 See Comparison
NZ_CP097412.1 See Comparison
OW969649.1 See Comparison
NZ_CP133845.1 See Comparison
CP067952.1 See Comparison
CP024516.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
OW969649.1 See Comparison
CP146574.1 See Comparison
NZ_LR890572.1 See Comparison
NZ_CP097412.1 See Comparison
CP067952.1 See Comparison
CP067676.1 See Comparison
CP024516.1 See Comparison
NZ_CP133845.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
CP146574.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore