Plasmid NZ_CP133845.1

Sequence

Nucleotide Information

Accession NZ_CP133845.1
Description Klebsiella pneumoniae strain KP6 plasmid unnamed, complete sequence
Source refseq
Topology circular
Length 229024 bp
GC Content 0.52 %
Created at NCBI Sept. 16, 2023



Assembly

Genome Data Information

Accession GCF_031432775.1
Assembly Coverage 59


Biosample

Curated Collection Information
Accession 37200066

PLASMID INFORMATION
Genotype ST307

GEOGRAPHICAL INFORMATION
Original Query United Kingdom,England
Original Query Type name
Coordinates (Lat/Lon) 52.80/-0.54
Address United Kingdom,England

ECOSYSTEM
Original Query Homo sapiens,pure culture,urine
Classification cell_culture,host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP024516.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
CP146574.1 See Comparison
OW969649.1 See Comparison
NZ_LR890572.1 See Comparison
NZ_CP097412.1 See Comparison
NZ_CP097416.1 See Comparison
CP067952.1 See Comparison
NZ_CP133845.1 See Comparison
CP024516.1 See Comparison
CP067676.1 See Comparison
CP146574.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
NZ_LR890572.1 See Comparison
CP067676.1 See Comparison
CP024516.1 See Comparison
NZ_LR890572.1 See Comparison
NZ_CP097412.1 See Comparison
NZ_CP097416.1 See Comparison
OW969649.1 See Comparison
CP067952.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
CP146574.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP097412.1 See Comparison
NZ_CP097416.1 See Comparison
OW969649.1 See Comparison
CP067952.1 See Comparison
CP067676.1 See Comparison
CP024516.1 See Comparison
NZ_CP129800.1 See Comparison
CP146574.1 See Comparison
CP067952.1 See Comparison
NZ_LR890572.1 See Comparison
NZ_CP097412.1 See Comparison
NZ_CP097416.1 See Comparison
OW969649.1 See Comparison
CP067676.1 See Comparison
CP146574.1 See Comparison
CP024516.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
OW969649.1 See Comparison
NZ_LR890572.1 See Comparison
NZ_CP097412.1 See Comparison
NZ_CP097416.1 See Comparison
NZ_CP129791.1 See Comparison
CP067676.1 See Comparison
CP067952.1 See Comparison
CP024516.1 See Comparison
NZ_CP129800.1 See Comparison
CP024516.1 See Comparison
CP146574.1 See Comparison
NZ_LR890572.1 See Comparison
NZ_CP097412.1 See Comparison
NZ_CP097416.1 See Comparison
OW969649.1 See Comparison
CP067952.1 See Comparison
CP067676.1 See Comparison
NZ_LR890572.1 See Comparison
NZ_CP129791.1 See Comparison
NZ_CP129800.1 See Comparison
CP146574.1 See Comparison
CP067952.1 See Comparison
NZ_CP097412.1 See Comparison
NZ_CP097416.1 See Comparison
OW969649.1 See Comparison
CP067676.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplussilScopy
amrfinderplusarsBcopy
amrfinderplusarsRcopy
amrfinderplusarsCcopy
amrfinderplusaac(3)-IIecopy
amrfinderplusaph(6)-Idcopy
amrfinderplusarsAcopy
amrfinderplusaph(3'')-Ibcopy
amrfinderpluspcoDcopy
amrfinderplusdfrA14copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 220 entries
…



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
Loading...
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000124__KP125893_00142IncFII156741156947minus99.5171002.36e-102377
mate-pair-formationNC_021502_00150MPF_T167373169682minus99.35110001452
mate-pair-formationNC_019155_00032MPF_F172255175110minus92.4379901700
mate-pair-formationNC_019165_00034MPF_F175116176468minus95.344990797
mate-pair-formationNC_021654_00016MPF_F179362181323minus98.4719801243
mate-pair-formationNC_011281_00082MPF_F181376182020minus95.3491009.95e-125395
mate-pair-formationNC_022609_00081MPF_F182299182973minus99.5561005.21e-150473
mate-pair-formationNC_014312_00128MPF_F183722184354minus99.0521004.46e-126398
mate-pair-formationNC_021502_00131MPF_T184746187382minus95.10810001736
mate-pair-formationNC_019389_00068MPF_F190156190671minus94.186893.73e-104335
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 16 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2