Plasmid NZ_LC163971.1

Sequence

Nucleotide Information

Accession NZ_LC163971.1
Description Escherichia coli O145:NM str. 12E70 plasmid pSTEC-O145-12E70-1, complete sequence
Source refseq
Topology circular
Length 70251 bp
GC Content 0.52 %
Created at NCBI June 26, 2020





Similar Plasmids

based on Mash distance

NZ_CP147066.1 See Comparison
NZ_LC163971.1 See Comparison
NZ_MH257956.1 See Comparison
NZ_LT985272.1 See Comparison
NZ_LT985274.1 See Comparison
NZ_LT985214.1 See Comparison
NZ_KU932024.1 See Comparison
LR890579.1 See Comparison
NZ_AP022091.1 See Comparison
NZ_LR890715.1 See Comparison
NZ_CP028854.1 See Comparison
NZ_MT077889.1 See Comparison
NZ_LT985272.1 See Comparison
NC_019072.1 See Comparison
NC_019057.1 See Comparison
NZ_CP032205.1 See Comparison
NZ_CP135724.1 See Comparison
NZ_CP135673.1 See Comparison
NZ_CP135687.1 See Comparison
NZ_CP135693.1 See Comparison
NZ_CP135716.1 See Comparison
NZ_CP135721.1 See Comparison
NZ_CP147066.1 See Comparison
CP088653.1 See Comparison
CP088531.1 See Comparison
NZ_CP047597.1 See Comparison
NC_013727.1 See Comparison
NZ_MH257956.1 See Comparison
NZ_LT985274.1 See Comparison
NZ_LT985214.1 See Comparison
NZ_LR890715.1 See Comparison
NZ_CP028854.1 See Comparison
NC_013727.1 See Comparison
NZ_KU932024.1 See Comparison
NZ_MT077889.1 See Comparison
CP088653.1 See Comparison
CP088531.1 See Comparison
NZ_CP047597.1 See Comparison
LR890579.1 See Comparison
NZ_AP022091.1 See Comparison
NC_019072.1 See Comparison
NC_019057.1 See Comparison
NZ_MH257956.1 See Comparison
NZ_CP135724.1 See Comparison
NZ_CP135673.1 See Comparison
NZ_CP135687.1 See Comparison
NZ_CP135693.1 See Comparison
NZ_CP135716.1 See Comparison
NZ_CP135721.1 See Comparison
NZ_CP032205.1 See Comparison
NZ_CP147066.1 See Comparison
NZ_LR890715.1 See Comparison
NZ_LT985272.1 See Comparison
NZ_LT985274.1 See Comparison
NZ_LT985214.1 See Comparison
NZ_CP028854.1 See Comparison
NZ_KU932024.1 See Comparison
LR890579.1 See Comparison
NZ_MT077889.1 See Comparison
NZ_AP022091.1 See Comparison
NC_013727.1 See Comparison
CP088653.1 See Comparison
CP088531.1 See Comparison
NZ_CP047597.1 See Comparison
NC_019072.1 See Comparison
NC_019057.1 See Comparison
NZ_CP032205.1 See Comparison
NZ_CP147066.1 See Comparison
NZ_CP135724.1 See Comparison
NZ_CP135673.1 See Comparison
NZ_CP135687.1 See Comparison
NZ_CP135693.1 See Comparison
NZ_CP135716.1 See Comparison
NZ_CP135721.1 See Comparison
LR890579.1 See Comparison
NZ_LT985272.1 See Comparison
NZ_LT985274.1 See Comparison
NZ_LT985214.1 See Comparison
NZ_CP028854.1 See Comparison
NZ_MH257956.1 See Comparison
NZ_LR890715.1 See Comparison
NZ_AP022091.1 See Comparison
NZ_CP147066.1 See Comparison
NZ_MT077889.1 See Comparison
NC_013727.1 See Comparison
NZ_CP032205.1 See Comparison
NZ_CP135724.1 See Comparison
NZ_CP135673.1 See Comparison
NZ_CP135687.1 See Comparison
NZ_CP135693.1 See Comparison
NZ_CP135716.1 See Comparison
NZ_CP135721.1 See Comparison
NZ_KU932024.1 See Comparison
CP088653.1 See Comparison
CP088531.1 See Comparison
NZ_CP047597.1 See Comparison
NC_019072.1 See Comparison
NC_019057.1 See Comparison
NZ_LT985272.1 See Comparison
NZ_MH257956.1 See Comparison
NZ_LT985274.1 See Comparison
NZ_LT985214.1 See Comparison
NZ_LR890715.1 See Comparison
NZ_KU932024.1 See Comparison
LR890579.1 See Comparison
NZ_MT077889.1 See Comparison
NZ_CP028854.1 See Comparison
NZ_AP022091.1 See Comparison
NZ_CP047597.1 See Comparison
CP088653.1 See Comparison
CP088531.1 See Comparison
NZ_LT985272.1 See Comparison
NC_013727.1 See Comparison
NZ_CP032205.1 See Comparison
NZ_CP147066.1 See Comparison
NZ_MH257956.1 See Comparison
NC_019072.1 See Comparison
NC_019057.1 See Comparison
NZ_CP135724.1 See Comparison
NZ_CP135673.1 See Comparison
NZ_CP135687.1 See Comparison
NZ_CP135693.1 See Comparison
NZ_CP135716.1 See Comparison
NZ_CP135721.1 See Comparison
NZ_LT985274.1 See Comparison
NZ_LT985214.1 See Comparison
LR890579.1 See Comparison
NZ_CP028854.1 See Comparison
NZ_LR890715.1 See Comparison
NZ_AP022091.1 See Comparison
NZ_CP047597.1 See Comparison
NZ_MT077889.1 See Comparison
CP088653.1 See Comparison
NZ_KU932024.1 See Comparison
CP088531.1 See Comparison
NZ_CP032205.1 See Comparison
NC_019072.1 See Comparison
NC_019057.1 See Comparison
NC_013727.1 See Comparison
NZ_CP135687.1 See Comparison
NZ_CP135724.1 See Comparison
NZ_CP135673.1 See Comparison
NZ_CP135716.1 See Comparison
NZ_CP135693.1 See Comparison
NZ_CP135721.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore