Plasmid CP088531.1

Sequence

Nucleotide Information

Accession CP088531.1
Description Escherichia coli strain E16EC0601 plasmid pE16EC0601-2, complete sequence
Source insd
Topology circular
Length 70293 bp
GC Content 0.52 %
Created at NCBI Dec. 9, 2021



Assembly

Genome Data Information

Accession GCF_021131505.1
Assembly Coverage 122


Biosample

Curated Collection Information
Accession 23391648

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 34.87N;126.99E
Original Query Type coordinates
Coordinates (Lat/Lon) 34.87/126.99
Address Yulgye-ri, Hwasun-gun, South Jeolla, 58165, South Korea

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NC_019072.1 See Comparison
NC_019057.1 See Comparison
NC_013727.1 See Comparison
NZ_CP032205.1 See Comparison
NZ_CP135724.1 See Comparison
NZ_CP135687.1 See Comparison
NZ_CP135721.1 See Comparison
NZ_CP147066.1 See Comparison
NZ_LC163971.1 See Comparison
NZ_MH257956.1 See Comparison
NZ_LT985272.1 See Comparison
NZ_LT985274.1 See Comparison
NZ_LT985214.1 See Comparison
NZ_CP028854.1 See Comparison
NZ_LR890715.1 See Comparison
NC_019072.1 See Comparison
LR890579.1 See Comparison
NZ_CP047597.1 See Comparison
NC_013727.1 See Comparison
NC_019057.1 See Comparison
NZ_CP032205.1 See Comparison
NZ_CP135724.1 See Comparison
NZ_CP135687.1 See Comparison
NZ_CP135721.1 See Comparison
NZ_CP147066.1 See Comparison
NZ_CP047597.1 See Comparison
NZ_LC163971.1 See Comparison
NZ_MH257956.1 See Comparison
NZ_LR890715.1 See Comparison
LR890579.1 See Comparison
NZ_LT985272.1 See Comparison
NZ_LT985274.1 See Comparison
NZ_LT985214.1 See Comparison
NZ_CP028854.1 See Comparison
NC_013727.1 See Comparison
NC_019072.1 See Comparison
NC_019057.1 See Comparison
NZ_CP135724.1 See Comparison
NZ_CP032205.1 See Comparison
NZ_CP135687.1 See Comparison
NZ_CP135721.1 See Comparison
NZ_CP028854.1 See Comparison
NZ_MH257956.1 See Comparison
NZ_LT985272.1 See Comparison
NZ_LT985274.1 See Comparison
NZ_LT985214.1 See Comparison
NZ_LR890715.1 See Comparison
NZ_CP147066.1 See Comparison
NZ_LC163971.1 See Comparison
NC_013727.1 See Comparison
LR890579.1 See Comparison
NZ_CP047597.1 See Comparison
CP088531.1 See Comparison
NC_019072.1 See Comparison
NC_019057.1 See Comparison
NZ_CP032205.1 See Comparison
NZ_LT985272.1 See Comparison
NZ_CP135724.1 See Comparison
NZ_CP135687.1 See Comparison
NZ_CP135721.1 See Comparison
NZ_CP147066.1 See Comparison
NZ_LC163971.1 See Comparison
NZ_MH257956.1 See Comparison
NZ_LT985274.1 See Comparison
NZ_LT985214.1 See Comparison
NZ_LR890715.1 See Comparison
NZ_CP047597.1 See Comparison
LR890579.1 See Comparison
NZ_CP028854.1 See Comparison
NZ_CP147066.1 See Comparison
NC_013727.1 See Comparison
NC_019072.1 See Comparison
NC_019057.1 See Comparison
NZ_CP032205.1 See Comparison
NZ_CP135724.1 See Comparison
NZ_CP135687.1 See Comparison
NZ_CP135721.1 See Comparison
NZ_MH257956.1 See Comparison
NZ_LC163971.1 See Comparison
NZ_LT985272.1 See Comparison
NZ_LT985274.1 See Comparison
NZ_LT985214.1 See Comparison
NZ_CP028854.1 See Comparison
NZ_LR890715.1 See Comparison
NC_019072.1 See Comparison
LR890579.1 See Comparison
NZ_CP047597.1 See Comparison
NC_019057.1 See Comparison
NZ_CP147066.1 See Comparison
NZ_CP032205.1 See Comparison
NZ_CP135724.1 See Comparison
NZ_CP135687.1 See Comparison
NZ_CP135721.1 See Comparison
NC_013727.1 See Comparison
LR890579.1 See Comparison
NZ_MH257956.1 See Comparison
NZ_CP028854.1 See Comparison
NZ_LC163971.1 See Comparison
NZ_LT985272.1 See Comparison
NZ_LT985274.1 See Comparison
NZ_LT985214.1 See Comparison
NZ_LR890715.1 See Comparison
NZ_CP047597.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore