Plasmid NZ_CP147066.1

Sequence

Nucleotide Information

Accession	NZ_CP147066.1
Description	Escherichia coli strain JKHS006 plasmid pJKHS006_3, complete sequence
Source	refseq
Topology	circular
Length	70335 bp
GC Content	0.52 %
Created at NCBI	April 22, 2024

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_038396495.1
Assembly Coverage	150

Biosample

Curated Collection Information

Accession	39992798

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Japan
Original Query Type	name
Coordinates (Lat/Lon)	36.57/139.24
Address	Japan

ECOSYSTEM

Original Query	environmental,hospital wastewater
Classification	hospital,wastewater
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

CP088653.1	See Comparison
CP088531.1	See Comparison
NC_013727.1	See Comparison
NZ_CP047597.1	See Comparison
NC_019072.1	See Comparison
NC_019057.1	See Comparison
NZ_CP032205.1	See Comparison
NZ_MH257956.1	See Comparison
NZ_CP135724.1	See Comparison
NZ_CP135673.1	See Comparison
NZ_CP135687.1	See Comparison
NZ_CP135693.1	See Comparison
NZ_CP135716.1	See Comparison
NZ_CP135721.1	See Comparison
NZ_LC163971.1	See Comparison
NZ_LT985272.1	See Comparison
NZ_LT985274.1	See Comparison
NZ_LT985214.1	See Comparison
NZ_LR890715.1	See Comparison
NZ_KU932024.1	See Comparison
NZ_CP028854.1	See Comparison
NZ_AP022091.1	See Comparison
LR890579.1	See Comparison
NZ_MT077889.1	See Comparison
NC_019057.1	See Comparison
CP088653.1	See Comparison
CP088531.1	See Comparison
NZ_CP047597.1	See Comparison
NZ_CP032205.1	See Comparison
NC_019072.1	See Comparison
NC_013727.1	See Comparison
NZ_CP135724.1	See Comparison
NZ_CP135693.1	See Comparison
NZ_CP135716.1	See Comparison
NZ_CP135721.1	See Comparison
NZ_CP135673.1	See Comparison
NZ_CP135687.1	See Comparison
NZ_LT985272.1	See Comparison
NZ_LC163971.1	See Comparison
NZ_MH257956.1	See Comparison
NZ_LT985274.1	See Comparison
NZ_LT985214.1	See Comparison
NZ_LR890715.1	See Comparison
NZ_CP028854.1	See Comparison
NZ_KU932024.1	See Comparison
LR890579.1	See Comparison
NZ_AP022091.1	See Comparison
NZ_MT077889.1	See Comparison
NZ_CP047597.1	See Comparison
CP088653.1	See Comparison
CP088531.1	See Comparison
NC_019072.1	See Comparison
NC_019057.1	See Comparison
NZ_LC163971.1	See Comparison
NZ_CP135716.1	See Comparison
NZ_CP135721.1	See Comparison
NC_013727.1	See Comparison
NZ_CP032205.1	See Comparison
NZ_CP135724.1	See Comparison
NZ_CP135673.1	See Comparison
NZ_CP135687.1	See Comparison
NZ_CP135693.1	See Comparison
LR890579.1	See Comparison
NZ_MH257956.1	See Comparison
NZ_LT985272.1	See Comparison
NZ_LT985274.1	See Comparison
NZ_LT985214.1	See Comparison
NZ_LR890715.1	See Comparison
NZ_CP028854.1	See Comparison
NZ_CP032205.1	See Comparison
NZ_KU932024.1	See Comparison
NZ_MT077889.1	See Comparison
NC_013727.1	See Comparison
NZ_AP022091.1	See Comparison
CP088653.1	See Comparison
CP088531.1	See Comparison
NZ_CP047597.1	See Comparison
NC_019072.1	See Comparison
NC_019057.1	See Comparison
NZ_AP022091.1	See Comparison
NZ_CP135724.1	See Comparison
NZ_CP135673.1	See Comparison
NZ_CP135687.1	See Comparison
NZ_CP135693.1	See Comparison
NZ_CP135716.1	See Comparison
NZ_CP135721.1	See Comparison
NZ_LC163971.1	See Comparison
NZ_LR890715.1	See Comparison
NZ_CP028854.1	See Comparison
NZ_MH257956.1	See Comparison
NZ_LT985272.1	See Comparison
NZ_LT985274.1	See Comparison
NZ_LT985214.1	See Comparison
LR890579.1	See Comparison
NC_013727.1	See Comparison
CP088653.1	See Comparison
CP088531.1	See Comparison
NZ_CP047597.1	See Comparison
NZ_KU932024.1	See Comparison
NZ_MT077889.1	See Comparison
NC_019072.1	See Comparison
NC_019057.1	See Comparison
NZ_CP032205.1	See Comparison
NZ_LT985272.1	See Comparison
NZ_MH257956.1	See Comparison
NZ_CP135724.1	See Comparison
NZ_CP135673.1	See Comparison
NZ_CP135687.1	See Comparison
NZ_CP135693.1	See Comparison
NZ_CP135716.1	See Comparison
NZ_CP135721.1	See Comparison
NZ_CP147066.1	See Comparison
NZ_LC163971.1	See Comparison
NZ_LT985274.1	See Comparison
NZ_LT985214.1	See Comparison
LR890579.1	See Comparison
NZ_LR890715.1	See Comparison
NZ_CP028854.1	See Comparison
NZ_AP022091.1	See Comparison
NC_013727.1	See Comparison
NZ_CP047597.1	See Comparison
NZ_KU932024.1	See Comparison
NZ_MT077889.1	See Comparison
CP088653.1	See Comparison
CP088531.1	See Comparison
NC_019072.1	See Comparison
NC_019057.1	See Comparison
NZ_CP135724.1	See Comparison
NZ_CP032205.1	See Comparison
NZ_CP135673.1	See Comparison
NZ_CP135687.1	See Comparison
NZ_CP135693.1	See Comparison
NZ_CP135716.1	See Comparison
NZ_CP135721.1	See Comparison
NZ_AP022091.1	See Comparison
NZ_LC163971.1	See Comparison
NZ_LR890715.1	See Comparison
NZ_CP028854.1	See Comparison
NZ_MH257956.1	See Comparison
NZ_LT985272.1	See Comparison
NZ_LT985274.1	See Comparison
NZ_LT985214.1	See Comparison
LR890579.1	See Comparison
NZ_KU932024.1	See Comparison
NZ_MT077889.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore