Plasmid NZ_CP135724.1
Sequence
Nucleotide Information
| Accession | NZ_CP135724.1 |
|---|---|
| Description | Escherichia coli strain TUM1223 plasmid pMTY1223_IncFII, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 70302 bp |
| GC Content | 0.52 % |
| Created at NCBI | Oct. 7, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 35768940 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Japan |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 36.57/139.24 |
| Address | Japan |
ECOSYSTEM
| Original Query | None |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaCTX-M-14 | copy | ||
| PGAG | repA | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | yacA | copy | ||
| PGAG | yacB | copy | ||
| PGAG | 3'-5' exonuclease | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | extended-spectrum class A beta-lactamase CTX-M-14 | copy | ||
| PGAG | IS1380-like element ISEcp1 family transposase | copy | ||
| PGAG | MFS transporter | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 103 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | CP019007 | MOBF | 31807 | 32356 | plus | 100 | 100 | 0 | 1016 |
| replicon | MK878891_00042 | IncFIA | 31 | 858 | plus | 99.517 | 97 | 0 | 1507 |
| replicon | AY458016 | IncFIC | 70045 | 70302 | minus | 100 | 99 | 2.94e-132 | 477 |
| relaxase | NC_017627_00068 | MOBF | 59956 | 65223 | plus | 97.096 | 100 | 0 | 3343 |
| mate-pair-formation | NC_022651_00077 | MPF_F | 34363 | 34671 | plus | 99.029 | 99 | 4.79e-63 | 212 |
| mate-pair-formation | NC_010409_00124 | MPF_F | 35249 | 35974 | plus | 97.934 | 100 | 6.52e-155 | 483 |
| mate-pair-formation | NC_019094_00090 | MPF_F | 35977 | 37386 | plus | 96.815 | 97 | 0 | 857 |
| mate-pair-formation | NC_017639_00094 | MPF_F | 38288 | 38800 | plus | 98.246 | 100 | 5.42e-98 | 316 |
| mate-pair-formation | NC_013437_00116 | MPF_T | 40839 | 43454 | plus | 91.284 | 99 | 0 | 1644 |
| mate-pair-formation | NC_007675_00027 | MPF_F | 43840 | 44469 | plus | 99.048 | 97 | 3.79e-135 | 424 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 15 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |