Plasmid NZ_CP135687.1
Sequence
Nucleotide Information
| Accession | NZ_CP135687.1 |
|---|---|
| Description | Escherichia coli strain TUM2830 plasmid pMTY2830_IncFII, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 70341 bp |
| GC Content | 0.52 % |
| Created at NCBI | Oct. 7, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 35768990 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Japan |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 36.57/139.24 |
| Address | Japan |
ECOSYSTEM
| Original Query | None |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaCTX-M-14 | copy | ||
| PGAG | repA | copy | ||
| PGAG | yacA | copy | ||
| PGAG | yacB | copy | ||
| PGAG | 3'-5' exonuclease | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | extended-spectrum class A beta-lactamase CTX-M-14 | copy | ||
| PGAG | IS1380-like element ISEcp1 family transposase | copy | ||
| PGAG | MFS transporter | copy | ||
| PGAG | ABC transporter ATP-binding protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 102 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| mate-pair-formation | NC_022651_00077 | MPF_F | 34375 | 34683 | plus | 99.029 | 99 | 4.79e-63 | 212 |
| mate-pair-formation | NC_010409_00124 | MPF_F | 35261 | 35986 | plus | 97.521 | 100 | 2.65e-154 | 481 |
| mate-pair-formation | NC_019094_00090 | MPF_F | 35989 | 37398 | plus | 96.815 | 97 | 0 | 857 |
| mate-pair-formation | NC_017639_00094 | MPF_F | 38300 | 38812 | plus | 98.246 | 100 | 5.42e-98 | 316 |
| mate-pair-formation | NC_013437_00116 | MPF_T | 40851 | 43466 | plus | 91.284 | 99 | 0 | 1644 |
| mate-pair-formation | NC_007675_00027 | MPF_F | 43852 | 44481 | plus | 99.048 | 97 | 3.79e-135 | 424 |
| mate-pair-formation | NC_017639_00100 | MPF_F | 44481 | 45437 | plus | 98.746 | 91 | 0 | 605 |
| mate-pair-formation | NC_018966_00040 | MPF_F | 45868 | 46452 | plus | 97.949 | 92 | 4.29e-124 | 393 |
| mate-pair-formation | NC_019094_00068 | MPF_F | 46452 | 48299 | plus | 94.481 | 100 | 0 | 1144 |
| mate-pair-formation | NC_008460_00107 | MPF_F | 52622 | 55441 | plus | 97.34 | 100 | 0 | 1785 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 15 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |