Plasmid LR890579.1

Sequence

Nucleotide Information

Accession LR890579.1
Description Escherichia coli isolate MSB1_5C-sc-2280313 genome assembly, plasmid: 4
Source insd
Topology circular
Length 70361 bp
GC Content 0.52 %
Created at NCBI Oct. 30, 2020



Biosample

Curated Collection Information
Accession 4089317

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Australia
Original Query Type name
Coordinates (Lat/Lon) -24.78/134.76
Address Australia

ECOSYSTEM
Original Query Homo sapiens,rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query healthy
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NC_019072.1 See Comparison
NC_019057.1 See Comparison
NC_013727.1 See Comparison
NZ_CP032205.1 See Comparison
NZ_CP135724.1 See Comparison
NZ_CP135687.1 See Comparison
NZ_CP135721.1 See Comparison
NZ_LC163971.1 See Comparison
NZ_CP147066.1 See Comparison
NZ_MH257956.1 See Comparison
NZ_LT985272.1 See Comparison
NZ_LT985274.1 See Comparison
NZ_LT985214.1 See Comparison
CP088531.1 See Comparison
NZ_LR890715.1 See Comparison
NZ_CP028854.1 See Comparison
LR890579.1 See Comparison
NZ_CP047597.1 See Comparison
NC_019072.1 See Comparison
NC_019057.1 See Comparison
NC_013727.1 See Comparison
NZ_CP032205.1 See Comparison
NZ_LC163971.1 See Comparison
NZ_CP135724.1 See Comparison
NZ_CP135687.1 See Comparison
NZ_CP135721.1 See Comparison
NZ_CP147066.1 See Comparison
NZ_LT985272.1 See Comparison
NZ_MH257956.1 See Comparison
NZ_LT985274.1 See Comparison
NZ_LT985214.1 See Comparison
NZ_LR890715.1 See Comparison
NZ_CP028854.1 See Comparison
NZ_CP047597.1 See Comparison
CP088531.1 See Comparison
NZ_CP135724.1 See Comparison
NC_019072.1 See Comparison
NC_019057.1 See Comparison
NC_013727.1 See Comparison
NZ_CP032205.1 See Comparison
NZ_CP135687.1 See Comparison
NZ_CP135721.1 See Comparison
NZ_LC163971.1 See Comparison
NZ_CP147066.1 See Comparison
NZ_MH257956.1 See Comparison
NZ_LR890715.1 See Comparison
NZ_LT985272.1 See Comparison
NZ_LT985274.1 See Comparison
NZ_LT985214.1 See Comparison
CP088531.1 See Comparison
NZ_CP028854.1 See Comparison
NC_013727.1 See Comparison
NZ_CP047597.1 See Comparison
NC_019072.1 See Comparison
NC_019057.1 See Comparison
NZ_LC163971.1 See Comparison
NZ_CP032205.1 See Comparison
NZ_CP135724.1 See Comparison
NZ_CP135687.1 See Comparison
NZ_CP135721.1 See Comparison
NZ_CP147066.1 See Comparison
NZ_MH257956.1 See Comparison
NZ_CP028854.1 See Comparison
NZ_LT985272.1 See Comparison
NZ_LT985274.1 See Comparison
NZ_LT985214.1 See Comparison
NZ_LR890715.1 See Comparison
NZ_CP032205.1 See Comparison
NZ_CP047597.1 See Comparison
NC_019072.1 See Comparison
NC_019057.1 See Comparison
CP088531.1 See Comparison
NC_013727.1 See Comparison
NZ_CP135724.1 See Comparison
NZ_CP135687.1 See Comparison
NZ_CP135721.1 See Comparison
NZ_CP147066.1 See Comparison
NZ_LC163971.1 See Comparison
NZ_MH257956.1 See Comparison
CP088531.1 See Comparison
NZ_LT985272.1 See Comparison
NZ_LT985274.1 See Comparison
NZ_LT985214.1 See Comparison
NZ_LR890715.1 See Comparison
NZ_CP028854.1 See Comparison
NC_013727.1 See Comparison
NZ_CP047597.1 See Comparison
NC_019072.1 See Comparison
NC_019057.1 See Comparison
NZ_LR890715.1 See Comparison
NZ_CP032205.1 See Comparison
NZ_CP135724.1 See Comparison
NZ_CP135687.1 See Comparison
NZ_CP135721.1 See Comparison
NZ_CP147066.1 See Comparison
NZ_LC163971.1 See Comparison
NZ_MH257956.1 See Comparison
NZ_LT985272.1 See Comparison
NZ_LT985274.1 See Comparison
NZ_LT985214.1 See Comparison
CP088531.1 See Comparison
NZ_CP028854.1 See Comparison
NZ_CP047597.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore