Plasmid NZ_HG970000.1
Sequence
Nucleotide Information
| Accession | NZ_HG970000.1 |
|---|---|
| Description | Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 plasmid pSEN, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 59372 bp |
| GC Content | 0.52 % |
| Created at NCBI | May 15, 2014 |
Host Taxonomy
According to NCBI Taxonomy
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Salmonella (590) |
| Species | Salmonella_enterica (28901) |
| Strain | Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 (550537) |
Biosample
Curated Collection Information
| Accession | 14229243 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | None |
|---|---|
| Original Query Type | None |
| Coordinates (Lat/Lon) | |
| Address | None |
ECOSYSTEM
| Original Query | None |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Similar Plasmids
based on Mash distance
Plasmid Visualization
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | spvD | copy | ||
| PGAG | replication regulatory protein RepA | copy | ||
| PGAG | tap | copy | ||
| PGAG | repA | copy | ||
| PGAG | AraC family transcriptional regulator | copy | ||
| PGAG | rck | copy | ||
| PGAG | YjiK family protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | DsbA family protein | copy | ||
| PGAG | helix-turn-helix transcriptional regulator | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 71 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| mate-pair-formation | NC_022651_00077 | MPF_F | 54503 | 54811 | plus | 91.262 | 99 | 4.06e-59 | 201 |
| replicon | 000114__CP015527 | IncFII | 1903 | 2784 | plus | 100 | 100 | 0 | 1629 |
| replicon | 000101__NZ_CP012345_00042 | IncFIB | 16023 | 17094 | minus | 93.19 | 100 | 0 | 1574 |
| mate-pair-formation | NC_019002_00072 | MPF_F | 55389 | 56126 | plus | 100 | 100 | 1.48e-150 | 470 |
| mate-pair-formation | NC_019094_00090 | MPF_F | 56129 | 57517 | plus | 90.987 | 96 | 0 | 798 |
| mate-pair-formation | NC_019002_00076 | MPF_F | 58335 | 58664 | plus | 100 | 100 | 1.46e-57 | 197 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 6 of 6 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |