Plasmid NZ_CP120316.1

Sequence

Nucleotide Information

Accession NZ_CP120316.1
Description Salmonella enterica subsp. enterica serovar Enteritidis strain PS_Ent_3_2022 plasmid p1, complete sequence
Source refseq
Topology circular
Length 59373 bp
GC Content 0.52 %
Created at NCBI May 28, 2023



Assembly

Genome Data Information

Accession GCF_030122175.1
Assembly Coverage 57


Biosample

Curated Collection Information
Accession 33677890

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query State of Palestine,West Bank
Original Query Type name
Coordinates (Lat/Lon) 32.03/35.29
Address State of Palestine,West Bank

ECOSYSTEM
Original Query Homo sapiens,human,State of Palestine: West Bank
Classification host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Salmonella gastroenteritis
DOID/SYMP
  • Salmonellosis (DOID:0060859 )
    • A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has symptoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment.

Visualization

PNG JSON

Plasmids from same Biosample



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based on Mash distance

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NZ_CP025557.1 See Comparison
NZ_CP025553.1 See Comparison
NZ_CP018639.1 See Comparison
NZ_CP017178.1 See Comparison
NZ_CP022004.1 See Comparison
NZ_CP018641.1 See Comparison
NZ_CP018660.1 See Comparison
NZ_CP018650.1 See Comparison
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NZ_CP018636.1 See Comparison
NZ_CP124523.1 See Comparison
NZ_CP136646.1 See Comparison
NZ_CP133566.1 See Comparison
NZ_CP133430.1 See Comparison
NZ_CP133427.1 See Comparison
NZ_CP133439.1 See Comparison
NZ_CP133433.1 See Comparison
NZ_CP133436.1 See Comparison
NZ_CP120323.1 See Comparison
NZ_CP120319.1 See Comparison
NZ_CP065123.1 See Comparison
NZ_CP126167.1 See Comparison
NZ_CP140791.1 See Comparison
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Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore