Plasmid NZ_CP050722.1

Sequence

Nucleotide Information

Accession NZ_CP050722.1
Description Salmonella enterica subsp. enterica serovar Enteritidis strain SE81 plasmid pSE81-1, complete sequence
Source refseq
Topology circular
Length 59372 bp
GC Content 0.52 %
Created at NCBI April 8, 2020



Assembly

Genome Data Information

Accession GCF_012050745.1
Assembly Coverage 75


Biosample

Curated Collection Information
Accession 14450170

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 31.23N;121.47E
Original Query Type coordinates
Coordinates (Lat/Lon) 31.23/121.47
Address People's Square, 120, People's Avenue, Jiangyin, Nanjingdonglu Subdistrict, Shanghai, Huangpu District, Shanghai, 200001, China

ECOSYSTEM
Original Query Homo sapiens,Human blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



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based on Mash distance

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NZ_CP126167.1 See Comparison
NZ_CP120323.1 See Comparison
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NZ_CP140780.1 See Comparison
NZ_CP050711.1 See Comparison
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NZ_CP050714.1 See Comparison
NZ_CP050718.1 See Comparison
NZ_CP011843.1 See Comparison
NZ_CP050708.1 See Comparison
NZ_CP011840.1 See Comparison
NZ_CP041972.1 See Comparison
NZ_CP066048.1 See Comparison
NZ_CP060523.1 See Comparison
NZ_CP063291.1 See Comparison
NZ_CP063709.1 See Comparison
NZ_CP063701.1 See Comparison
NZ_CP110221.1 See Comparison
NZ_MN125607.1 See Comparison
NZ_CP104363.1 See Comparison
NZ_CP104642.1 See Comparison
NZ_CP104644.1 See Comparison
NZ_CP104359.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore