Plasmid NZ_CP050714.1

Sequence

Nucleotide Information

Accession NZ_CP050714.1
Description Salmonella enterica subsp. enterica serovar Enteritidis strain SE104 plasmid pSE104-2, complete sequence
Source refseq
Topology circular
Length 59372 bp
GC Content 0.52 %
Created at NCBI April 8, 2020



Assembly

Genome Data Information

Accession GCF_012050525.1
Assembly Coverage 113


Biosample

Curated Collection Information
Accession 14450172

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 31.23N;121.47E
Original Query Type coordinates
Coordinates (Lat/Lon) 31.23/121.47
Address People's Square, 120, People's Avenue, Jiangyin, Nanjingdonglu Subdistrict, Shanghai, Huangpu District, Shanghai, 200001, China

ECOSYSTEM
Original Query Homo sapiens,Diarrheal patient
Classification disease,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP
  • Diarrhea (DOID:13250 )
    • A gastrointestinal system disease described as the condition of having frequent loose or liquid bowel movements. Acute diarrhea is a common cause of death in developing countries and the second most common cause of infant deaths worldwide. The loss of fluids through diarrhea can cause severe dehydration which is one cause of death in diarrhea sufferers. Along with water, sufferers also lose dangerous amounts of important salts, electrolytes, and other nutrients. There are at least four types of diarrhea: secretory diarrhea, osmotic diarrhea, motility-related diarrhea, and inflammatory diarrhea.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP043434.1 See Comparison
NZ_CP040647.1 See Comparison
NZ_CP040645.1 See Comparison
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NZ_CP030796.1 See Comparison
NZ_CP025557.1 See Comparison
NZ_CP025553.1 See Comparison
NZ_CP015525.1 See Comparison
NZ_CP015527.1 See Comparison
NZ_CP018653.1 See Comparison
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NZ_CP140780.1 See Comparison
NZ_CP050711.1 See Comparison
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NZ_CP008927.1 See Comparison
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NZ_CP040645.1 See Comparison
NZ_CP041178.1 See Comparison
NZ_CP026714.1 See Comparison
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NZ_CP023437.1 See Comparison
NZ_CP025557.1 See Comparison
NZ_CP025553.1 See Comparison
NZ_CP017178.1 See Comparison
NZ_CP026054.1 See Comparison
NZ_CP022004.1 See Comparison
NZ_CP015525.1 See Comparison
NZ_CP015527.1 See Comparison
NZ_CP018653.1 See Comparison
NZ_CP018639.1 See Comparison
NZ_CP018641.1 See Comparison
NZ_CP018660.1 See Comparison
NZ_CP018650.1 See Comparison
NZ_CP018663.1 See Comparison
NZ_CP018636.1 See Comparison
NZ_CP136646.1 See Comparison
NZ_CP133566.1 See Comparison
NZ_CP133430.1 See Comparison
NZ_CP133427.1 See Comparison
NZ_CP133439.1 See Comparison
NZ_CP133433.1 See Comparison
NZ_CP133436.1 See Comparison
NZ_CP065123.1 See Comparison
NZ_CP140791.1 See Comparison
NZ_CP126167.1 See Comparison
NZ_CP120323.1 See Comparison
NZ_CP120319.1 See Comparison
NZ_CP120316.1 See Comparison
NZ_CP124523.1 See Comparison
NZ_CP140780.1 See Comparison
NZ_CP066048.1 See Comparison
NZ_KT317612.1 See Comparison
NZ_CP011843.1 See Comparison
NZ_CP011840.1 See Comparison
NZ_CP050711.1 See Comparison
NZ_CP050718.1 See Comparison
NZ_CP050722.1 See Comparison
NZ_CP050708.1 See Comparison
NZ_HG970000.1 See Comparison
NZ_CP041972.1 See Comparison
NZ_CP063709.1 See Comparison
NZ_CP063701.1 See Comparison
NZ_MN125607.1 See Comparison
NZ_CP063291.1 See Comparison
NZ_CP060523.1 See Comparison
CP092310.1 See Comparison
NZ_CP110221.1 See Comparison
NZ_CP104642.1 See Comparison
NZ_CP104644.1 See Comparison
NZ_CP104363.1 See Comparison
NZ_CP104359.1 See Comparison
CP092327.1 See Comparison
CP092322.1 See Comparison
CP092308.1 See Comparison
CP092319.1 See Comparison
CP092331.1 See Comparison
CP092306.1 See Comparison
CP092292.1 See Comparison
NZ_CP084533.1 See Comparison
CP082732.1 See Comparison
NZ_CP082917.1 See Comparison
NZ_CP075119.1 See Comparison
NZ_CP075123.1 See Comparison
NZ_CP075121.1 See Comparison
NZ_CP080092.1 See Comparison
NZ_CP074427.1 See Comparison
CP074255.1 See Comparison
CP074315.1 See Comparison
CP074253.1 See Comparison
CP074239.1 See Comparison
NZ_CP020826.1 See Comparison
NZ_CP020824.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore