Plasmid NZ_CP150659.1

Sequence

Nucleotide Information

Accession NZ_CP150659.1
Description Staphylococcus aureus strain BSN214 plasmid pUSA01, complete sequence
Source refseq
Topology circular
Length 3125 bp
GC Content 0.29 %
Created at NCBI April 9, 2024



Assembly

Genome Data Information

Accession GCF_038024225.1
Assembly Coverage 140


Biosample

Curated Collection Information

Accession 38637794

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 42.33N;83.05W
Original Query Type coordinates
Coordinates (Lat/Lon) 42.33/-83.05
Address Washington Boulevard, Detroit, Wayne County, Michigan, 48226, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 28
Host-associated Sex male

DISEASE
Original Query None
DOID/SYMP

Visualization


Plasmids from same Biosample



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based on Mash distance

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NZ_CP043391.1 See Comparison
NZ_CP043394.1 See Comparison
NZ_CP043388.1 See Comparison
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NZ_CP035370.1 See Comparison
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NZ_CP014363.1 See Comparison
NZ_CP014382.1 See Comparison
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NC_013295.1 See Comparison
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CP150111.1 See Comparison
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NZ_CP120072.1 See Comparison
NZ_CP120032.1 See Comparison
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NZ_CP120055.1 See Comparison
NZ_CP120142.1 See Comparison
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NZ_CP120172.1 See Comparison
NZ_CP120154.1 See Comparison
NZ_CP120040.1 See Comparison
NZ_CP120184.1 See Comparison
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NZ_CP120092.1 See Comparison
NZ_CP120110.1 See Comparison
NZ_CP069479.1 See Comparison
NZ_CP002150.1 See Comparison
NZ_CP002140.1 See Comparison
NZ_CP002133.1 See Comparison
NZ_CP002142.1 See Comparison
NZ_CP069536.1 See Comparison
NZ_CP069472.1 See Comparison
NZ_CP099578.1 See Comparison
CP051968.1 See Comparison
NZ_CP103849.1 See Comparison
NZ_CP055226.1 See Comparison
NZ_CP014430.1 See Comparison
NZ_CP062440.1 See Comparison
NZ_CP062333.1 See Comparison
NZ_CP062316.1 See Comparison
NZ_CP062460.1 See Comparison
NZ_CP092054.1 See Comparison
NZ_CP081356.1 See Comparison
NZ_CP080559.1 See Comparison
NZ_CP014410.1 See Comparison
NZ_CP014413.1 See Comparison
NZ_CP014433.1 See Comparison
NZ_CP014393.1 See Comparison
NZ_CP014436.1 See Comparison
NZ_CP014398.1 See Comparison
NZ_CP014421.1 See Comparison
NZ_CP014403.1 See Comparison
NZ_CP014442.1 See Comparison
NZ_CP014439.1 See Comparison
NZ_CP009424.1 See Comparison
NZ_CP014427.1 See Comparison
NZ_CP014424.1 See Comparison
NC_012417.1 See Comparison
NC_018975.1 See Comparison
NC_018960.1 See Comparison
NC_007790.1 See Comparison
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NC_018958.1 See Comparison
NC_013300.1 See Comparison
NC_013297.1 See Comparison
NC_013295.1 See Comparison
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CP030486.1 See Comparison
CP030515.1 See Comparison
NZ_CP043391.1 See Comparison
CP030417.1 See Comparison
NZ_CP043394.1 See Comparison
NZ_CP043388.1 See Comparison
NZ_CP014382.1 See Comparison
NZ_LR130520.1 See Comparison
NZ_CP035370.1 See Comparison
NZ_CP014366.1 See Comparison
NZ_CP014388.1 See Comparison
NZ_CP014385.1 See Comparison
NZ_CP014377.1 See Comparison
NZ_CP152410.1 See Comparison
NZ_CP025489.1 See Comparison
NZ_CP025486.1 See Comparison
NZ_CP025490.1 See Comparison
NZ_CP025487.1 See Comparison
NZ_CP025488.1 See Comparison
NZ_CP129354.1 See Comparison
NZ_CP129359.1 See Comparison
NZ_CP120124.1 See Comparison
NZ_CP136527.1 See Comparison
NZ_CP136531.1 See Comparison
CP156703.1 See Comparison
NZ_CP014363.1 See Comparison
NZ_CP014372.1 See Comparison
NZ_CP014369.1 See Comparison
NZ_CP029668.1 See Comparison
NZ_CP029676.1 See Comparison
NZ_CP025482.1 See Comparison
NZ_CP025496.1 See Comparison
CP157208.1 See Comparison
NZ_CP131651.1 See Comparison
CP154292.1 See Comparison
CP154381.1 See Comparison
CP154281.1 See Comparison
CP154287.1 See Comparison
NZ_CP152121.1 See Comparison
CP152326.1 See Comparison
CP152318.1 See Comparison
CP152321.1 See Comparison
CP152324.1 See Comparison
CP151889.1 See Comparison
NZ_CP150659.1 See Comparison
CP151825.1 See Comparison
NZ_CP151119.1 See Comparison
NZ_CP149460.1 See Comparison
NZ_CP148083.1 See Comparison
NZ_CP125869.1 See Comparison
CP151576.1 See Comparison
CP151580.1 See Comparison
CP151573.1 See Comparison
CP151564.1 See Comparison
NZ_CP149808.1 See Comparison
CP051968.1 See Comparison
NZ_CP147701.1 See Comparison
NZ_CP147690.1 See Comparison
NZ_CP120049.1 See Comparison
NZ_CP120035.1 See Comparison
NZ_CP120072.1 See Comparison
NZ_CP120032.1 See Comparison
NZ_CP120136.1 See Comparison
NZ_CP120203.1 See Comparison
NZ_CP120019.1 See Comparison
NZ_CP120169.1 See Comparison
NZ_CP120098.1 See Comparison
NZ_CP120120.1 See Comparison
NZ_CP120081.1 See Comparison
NZ_CP120176.1 See Comparison
NZ_CP120142.1 See Comparison
NZ_CP120095.1 See Comparison
NZ_CP002133.1 See Comparison
NZ_CP002142.1 See Comparison
NZ_CP069479.1 See Comparison
NZ_CP069536.1 See Comparison
NZ_CP069472.1 See Comparison
NZ_CP055226.1 See Comparison
NZ_CP148078.1 See Comparison
CP150105.1 See Comparison
CP150111.1 See Comparison
NZ_CP120117.1 See Comparison
NZ_CP120172.1 See Comparison
NZ_CP120154.1 See Comparison
NZ_CP120040.1 See Comparison
NZ_CP120184.1 See Comparison
NZ_CP120046.1 See Comparison
NZ_CP120092.1 See Comparison
NZ_CP120110.1 See Comparison
NZ_CP120055.1 See Comparison
NZ_CP002150.1 See Comparison
NZ_CP002140.1 See Comparison
NZ_CP103849.1 See Comparison
NZ_CP062440.1 See Comparison
NZ_CP062460.1 See Comparison
NZ_CP099578.1 See Comparison
NZ_CP062333.1 See Comparison
NZ_CP062316.1 See Comparison
NC_018975.1 See Comparison
NZ_CP014424.1 See Comparison
NZ_CP014410.1 See Comparison
NZ_CP014433.1 See Comparison
NZ_CP014398.1 See Comparison
NZ_CP009424.1 See Comparison
NZ_CP092054.1 See Comparison
NZ_CP081356.1 See Comparison
NZ_CP080559.1 See Comparison
NZ_CP014430.1 See Comparison
NZ_CP014413.1 See Comparison
NZ_CP014393.1 See Comparison
NZ_CP014436.1 See Comparison
NZ_CP014421.1 See Comparison
NZ_CP014403.1 See Comparison
NZ_CP014442.1 See Comparison
NZ_CP014439.1 See Comparison
NZ_CP014427.1 See Comparison
NZ_CP007178.1 See Comparison
NC_018960.1 See Comparison
NC_018958.1 See Comparison
NC_013300.1 See Comparison
NC_013297.1 See Comparison
NC_013295.1 See Comparison
NC_007790.1 See Comparison
NC_012417.1 See Comparison
CP030417.1 See Comparison
CP030577.1 See Comparison
CP030515.1 See Comparison
CP030486.1 See Comparison
NZ_LR130520.1 See Comparison
NZ_CP043391.1 See Comparison
NZ_CP043394.1 See Comparison
NZ_CP043388.1 See Comparison
NZ_CP129354.1 See Comparison
NZ_CP035370.1 See Comparison
NZ_CP025489.1 See Comparison
NZ_CP025486.1 See Comparison
NZ_CP025490.1 See Comparison
NZ_CP025487.1 See Comparison
NZ_CP025488.1 See Comparison
NZ_CP120124.1 See Comparison
NZ_CP014363.1 See Comparison
NZ_CP014372.1 See Comparison
NZ_CP014369.1 See Comparison
NZ_CP014382.1 See Comparison
NZ_CP014366.1 See Comparison
NZ_CP014388.1 See Comparison
NZ_CP014385.1 See Comparison
NZ_CP014377.1 See Comparison
NZ_CP029668.1 See Comparison
NZ_CP029676.1 See Comparison
NZ_CP025482.1 See Comparison
NZ_CP025496.1 See Comparison
NZ_CP129359.1 See Comparison
NZ_CP136527.1 See Comparison
NZ_CP136531.1 See Comparison
CP154292.1 See Comparison
CP157208.1 See Comparison
CP156703.1 See Comparison
CP154287.1 See Comparison
NZ_CP125869.1 See Comparison
CP152326.1 See Comparison
CP152318.1 See Comparison
CP152321.1 See Comparison
CP152324.1 See Comparison
NZ_CP152121.1 See Comparison
NZ_CP152410.1 See Comparison
CP151825.1 See Comparison
NZ_CP131651.1 See Comparison
CP154381.1 See Comparison
CP151889.1 See Comparison
CP154281.1 See Comparison
NZ_CP151119.1 See Comparison
NZ_CP148083.1 See Comparison
NZ_CP149460.1 See Comparison
CP151576.1 See Comparison
CP151580.1 See Comparison
CP151573.1 See Comparison
CP151564.1 See Comparison
NZ_CP120049.1 See Comparison
NZ_CP149808.1 See Comparison
NZ_CP147701.1 See Comparison
NZ_CP147690.1 See Comparison
NZ_CP148078.1 See Comparison
CP150105.1 See Comparison
CP150111.1 See Comparison
NZ_CP120035.1 See Comparison
NZ_CP120072.1 See Comparison
NZ_CP120032.1 See Comparison
NZ_CP120136.1 See Comparison
NZ_CP120203.1 See Comparison
NZ_CP120019.1 See Comparison
NZ_CP120169.1 See Comparison
NZ_CP120098.1 See Comparison
NZ_CP120176.1 See Comparison
NZ_CP120120.1 See Comparison
NZ_CP120142.1 See Comparison
NZ_CP120095.1 See Comparison
NZ_CP120081.1 See Comparison
NZ_CP120117.1 See Comparison
NZ_CP002150.1 See Comparison
NZ_CP120172.1 See Comparison
NZ_CP120154.1 See Comparison
NZ_CP120040.1 See Comparison
NZ_CP120184.1 See Comparison
NZ_CP120046.1 See Comparison
NZ_CP120092.1 See Comparison
NZ_CP120110.1 See Comparison
NZ_CP120055.1 See Comparison
NZ_CP002140.1 See Comparison
NZ_CP002133.1 See Comparison
NZ_CP002142.1 See Comparison
CP051968.1 See Comparison
NZ_CP055226.1 See Comparison
NZ_CP069479.1 See Comparison
NZ_CP069536.1 See Comparison
NZ_CP069472.1 See Comparison
NZ_CP103849.1 See Comparison
NZ_CP062440.1 See Comparison
NZ_CP099578.1 See Comparison
NZ_CP062460.1 See Comparison
NZ_CP062333.1 See Comparison
NZ_CP062316.1 See Comparison
NZ_CP081356.1 See Comparison
NZ_CP092054.1 See Comparison
NZ_CP080559.1 See Comparison
NZ_CP014413.1 See Comparison
NZ_CP014393.1 See Comparison
NZ_CP014436.1 See Comparison
NZ_CP014421.1 See Comparison
NZ_CP014403.1 See Comparison
NZ_CP014442.1 See Comparison
NZ_CP014439.1 See Comparison
NZ_CP014427.1 See Comparison
NZ_CP009424.1 See Comparison
NZ_CP014424.1 See Comparison
NZ_CP014430.1 See Comparison
NZ_CP014410.1 See Comparison
NZ_CP014433.1 See Comparison
NZ_CP014398.1 See Comparison
NC_012417.1 See Comparison
NZ_CP007178.1 See Comparison
NC_013300.1 See Comparison
NC_013297.1 See Comparison
NC_013295.1 See Comparison
NC_018975.1 See Comparison
NC_018960.1 See Comparison
NC_018958.1 See Comparison
NC_007790.1 See Comparison
CP030577.1 See Comparison
CP030515.1 See Comparison
CP030486.1 See Comparison
NZ_LR130520.1 See Comparison
CP030417.1 See Comparison
NZ_CP035370.1 See Comparison
NZ_CP043391.1 See Comparison
NZ_CP043394.1 See Comparison
NZ_CP043388.1 See Comparison
NZ_CP025489.1 See Comparison
NZ_CP014363.1 See Comparison
NZ_CP014372.1 See Comparison
NZ_CP014369.1 See Comparison
NZ_CP014382.1 See Comparison
NZ_CP014366.1 See Comparison
NZ_CP014388.1 See Comparison
NZ_CP014385.1 See Comparison
NZ_CP014377.1 See Comparison
NZ_CP029676.1 See Comparison
NZ_CP025482.1 See Comparison
NZ_CP029668.1 See Comparison
NZ_CP025486.1 See Comparison
NZ_CP025490.1 See Comparison
NZ_CP025487.1 See Comparison
NZ_CP025488.1 See Comparison
NZ_CP025496.1 See Comparison
NZ_CP129354.1 See Comparison
NZ_CP129359.1 See Comparison
NZ_CP120124.1 See Comparison
NZ_CP136527.1 See Comparison
NZ_CP136531.1 See Comparison
CP154292.1 See Comparison
CP157208.1 See Comparison
CP156703.1 See Comparison
NZ_CP152121.1 See Comparison
NZ_CP152410.1 See Comparison
CP154381.1 See Comparison
NZ_CP125869.1 See Comparison
CP154281.1 See Comparison
CP154287.1 See Comparison
CP151576.1 See Comparison
CP152326.1 See Comparison
CP152318.1 See Comparison
CP152321.1 See Comparison
CP152324.1 See Comparison
CP151889.1 See Comparison
CP151825.1 See Comparison
NZ_CP131651.1 See Comparison
CP151580.1 See Comparison
CP151573.1 See Comparison
CP151564.1 See Comparison
NZ_CP149808.1 See Comparison
NZ_CP148083.1 See Comparison
NZ_CP151119.1 See Comparison
NZ_CP149460.1 See Comparison
NZ_CP147690.1 See Comparison
NZ_CP148078.1 See Comparison
NZ_CP147701.1 See Comparison
NZ_CP120095.1 See Comparison
CP150105.1 See Comparison
CP150111.1 See Comparison
NZ_CP120117.1 See Comparison
NZ_CP120172.1 See Comparison
NZ_CP120049.1 See Comparison
NZ_CP120154.1 See Comparison
NZ_CP120035.1 See Comparison
NZ_CP120072.1 See Comparison
NZ_CP120032.1 See Comparison
NZ_CP120040.1 See Comparison
NZ_CP120136.1 See Comparison
NZ_CP120184.1 See Comparison
NZ_CP120203.1 See Comparison
NZ_CP120019.1 See Comparison
NZ_CP120046.1 See Comparison
NZ_CP120169.1 See Comparison
NZ_CP120098.1 See Comparison
NZ_CP120092.1 See Comparison
NZ_CP120120.1 See Comparison
NZ_CP120081.1 See Comparison
NZ_CP120110.1 See Comparison
NZ_CP120176.1 See Comparison
NZ_CP120055.1 See Comparison
NZ_CP120142.1 See Comparison
NZ_CP055226.1 See Comparison
NZ_CP002133.1 See Comparison
NZ_CP002142.1 See Comparison
NZ_CP002150.1 See Comparison
NZ_CP002140.1 See Comparison
NZ_CP069479.1 See Comparison
NZ_CP069536.1 See Comparison
NZ_CP069472.1 See Comparison
NZ_CP099578.1 See Comparison
CP051968.1 See Comparison
NZ_CP103849.1 See Comparison


Identical Plasmids

100% Sequence Identity


  • Sequence

    • Accession: NZ_CP136531.1
    • Description: Staphylococcus aureus strain BAA-1556_Catania plasmid pUSA01, complete sequence
    • Source: refseq
    • Created at NCBI: Oct. 20, 2023

  • Biosample

    Accession: 37705136
  • GEOGRAPHICAL INFORMATION
    • Original Query: 37.52N;15.06E
    • Original Query Type: coordinates
    • Address: Via Fondo Cosentino, San Nullo, San Giovanni Galermo-Trappeto-Cibali, Catania, Sicily, 95123, Italy
    • Coordinates (Lat/Lon): 37.52/15.06
  • ECOSYSTEM
    • Original Query: Homo sapiens,University of Catania
    • Classification: host_associated,location
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Skin infection
    • DOID/SYMP:
      • Skin disease (DOID:37 )
      • An integumentary system disease that is located_in skin.
      • Disease infectious agent (DOID:0050117 )
      • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
  • Visualization


  • Sequence

    • Accession: NZ_CP136527.1
    • Description: Staphylococcus aureus strain BAA-1556_Catania_SCV plasmid pUSA01, complete sequence
    • Source: refseq
    • Created at NCBI: Oct. 20, 2023

  • Biosample

    Accession: 37705137
  • GEOGRAPHICAL INFORMATION
    • Original Query: 37.52N;15.06E
    • Original Query Type: coordinates
    • Address: Via Fondo Cosentino, San Nullo, San Giovanni Galermo-Trappeto-Cibali, Catania, Sicily, 95123, Italy
    • Coordinates (Lat/Lon): 37.52/15.06
  • ECOSYSTEM
    • Original Query: Homo sapiens,University of Catania
    • Classification: host_associated,location
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Skin infection
    • DOID/SYMP:
      • Skin disease (DOID:37 )
      • An integumentary system disease that is located_in skin.
      • Disease infectious agent (DOID:0050117 )
      • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
  • Visualization






















  • Sequence

    • Accession: NZ_CP152121.1
    • Description: Staphylococcus aureus strain BSN62-2 plasmid pUSA01, complete sequence
    • Source: refseq
    • Created at NCBI: May 17, 2024

  • Biosample

    Accession: 38351595
  • GEOGRAPHICAL INFORMATION
    • Original Query: 42.33N;83.05W
    • Original Query Type: coordinates
    • Address: Washington Boulevard, Detroit, Wayne County, Michigan, 48226, United States
    • Coordinates (Lat/Lon): 42.33/-83.05
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: central line-associated bloodstream infection,death
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
      • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
  • Visualization















  • Sequence

    • Accession: CP151573.1
    • Description: Staphylococcus aureus strain BSN173 plasmid pUSA01, complete sequence
    • Source: insd
    • Created at NCBI: April 21, 2024

  • Biosample

    Accession: 38637753
  • GEOGRAPHICAL INFORMATION
    • Original Query: 42.33N;83.05W
    • Original Query Type: coordinates
    • Address: Washington Boulevard, Detroit, Wayne County, Michigan, 48226, United States
    • Coordinates (Lat/Lon): 42.33/-83.05
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: prosthetic joint infection,recovery
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
      • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
  • Visualization



  • Sequence

    • Accession: CP154292.1
    • Description: Staphylococcus aureus strain BSN196 plasmid pUSA01, complete sequence
    • Source: insd
    • Created at NCBI: May 6, 2024

  • Biosample

    Accession: 38637776
  • GEOGRAPHICAL INFORMATION
    • Original Query: 42.33N;83.05W
    • Original Query Type: coordinates
    • Address: Washington Boulevard, Detroit, Wayne County, Michigan, 48226, United States
    • Coordinates (Lat/Lon): 42.33/-83.05
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: skin/soft tissue infection,recovery
    • DOID/SYMP:
      • Skin disease (DOID:37 )
      • An integumentary system disease that is located_in skin.
      • Disease infectious agent (DOID:0050117 )
      • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
  • Visualization






Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2