Plasmid NZ_CP120172.1

Sequence

Nucleotide Information

Accession NZ_CP120172.1
Description Staphylococcus aureus strain Dog022 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 3123 bp
GC Content 0.29 %
Created at NCBI Jan. 6, 2024



Assembly

Genome Data Information

Accession GCF_034014015.1
Assembly Coverage 388


Biosample

Curated Collection Information

Accession 33696767

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 1.3345S;36.7331E
Original Query Type coordinates
Coordinates (Lat/Lon) -1.33/36.73
Address Hillcrest Elementary School, Hillcrest Road, Karen C, Karen ward, Lang'ata, Nairobi, Nairobi County, Nairobi, 00517, Kenya

ECOSYSTEM
Original Query Canis lupus familiaris,cell culture,nostril,nasal swab
Classification cell_culture,host_associated,nasal,respiratory_system
Host-associated Taxon
  • Canis lupus (9615)

DISEASE
Original Query None
DOID/SYMP

Visualization


Plasmids from same Biosample



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based on Mash distance

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NZ_CP081356.1 See Comparison
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NZ_CP069479.1 See Comparison
NZ_CP069536.1 See Comparison
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NZ_CP120055.1 See Comparison
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NZ_CP120046.1 See Comparison
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NZ_CP069479.1 See Comparison
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NZ_CP002150.1 See Comparison
NZ_CP002140.1 See Comparison
NZ_CP002133.1 See Comparison
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NZ_CP099578.1 See Comparison
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NZ_CP092054.1 See Comparison
NZ_CP080559.1 See Comparison
NZ_CP014410.1 See Comparison
NZ_CP014430.1 See Comparison
NZ_CP014413.1 See Comparison
NZ_CP014393.1 See Comparison
NZ_CP014433.1 See Comparison
NZ_CP014436.1 See Comparison
NZ_CP014421.1 See Comparison
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NZ_CP014403.1 See Comparison
NZ_CP009424.1 See Comparison
NZ_CP014442.1 See Comparison
NZ_CP014439.1 See Comparison
NZ_CP014427.1 See Comparison
NZ_CP014424.1 See Comparison
NC_010428.1 See Comparison
NZ_CP007178.1 See Comparison
NC_013300.1 See Comparison
NC_013297.1 See Comparison
NC_013295.1 See Comparison
NC_007790.1 See Comparison
NC_012417.1 See Comparison
NZ_LR130520.1 See Comparison
NZ_CP043391.1 See Comparison
NZ_CP043394.1 See Comparison
NZ_CP043388.1 See Comparison
NZ_CP035370.1 See Comparison
NZ_CP025488.1 See Comparison
NZ_CP014382.1 See Comparison
NZ_CP014366.1 See Comparison
NZ_CP014388.1 See Comparison
NZ_CP014377.1 See Comparison
NZ_CP014363.1 See Comparison
NZ_CP014372.1 See Comparison
NZ_CP014369.1 See Comparison
NZ_CP029668.1 See Comparison
NZ_CP131651.1 See Comparison
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CP154281.1 See Comparison
NZ_CP129354.1 See Comparison
NZ_CP129359.1 See Comparison
NZ_CP120124.1 See Comparison
NZ_CP136527.1 See Comparison
NZ_CP136531.1 See Comparison
CP156703.1 See Comparison
NZ_CP152121.1 See Comparison
CP152326.1 See Comparison
CP152321.1 See Comparison
CP152324.1 See Comparison
NZ_CP149808.1 See Comparison
NZ_CP151119.1 See Comparison
NZ_CP149460.1 See Comparison
CP151576.1 See Comparison
CP151580.1 See Comparison
CP151573.1 See Comparison
CP151564.1 See Comparison
NZ_CP147701.1 See Comparison
NZ_CP150659.1 See Comparison
NZ_CP148083.1 See Comparison
NZ_CP147690.1 See Comparison
NZ_CP120059.1 See Comparison
CP150105.1 See Comparison
CP150111.1 See Comparison
NZ_CP120117.1 See Comparison
NZ_CP120172.1 See Comparison
NZ_CP120127.1 See Comparison
NZ_CP120154.1 See Comparison
NZ_CP120145.1 See Comparison
NZ_CP120040.1 See Comparison
NZ_CP120164.1 See Comparison
NZ_CP120184.1 See Comparison
NZ_CP120043.1 See Comparison
NZ_CP120046.1 See Comparison
NZ_CP120049.1 See Comparison
NZ_CP120035.1 See Comparison
NZ_CP120092.1 See Comparison
NZ_CP120178.1 See Comparison
NZ_CP120072.1 See Comparison
NZ_CP120110.1 See Comparison
NZ_CP120032.1 See Comparison
NZ_CP120136.1 See Comparison
NZ_CP120052.1 See Comparison
NZ_CP120203.1 See Comparison
NZ_CP120019.1 See Comparison
NZ_CP120169.1 See Comparison
NZ_CP120098.1 See Comparison
NZ_CP120120.1 See Comparison
NZ_CP120081.1 See Comparison
NZ_CP120113.1 See Comparison
NZ_CP120176.1 See Comparison
NZ_CP120142.1 See Comparison
NZ_CP120095.1 See Comparison
NZ_CP002150.1 See Comparison
NZ_CP120055.1 See Comparison
NZ_CP002140.1 See Comparison
NZ_CP055226.1 See Comparison
NZ_CP002133.1 See Comparison
NZ_CP002142.1 See Comparison
NZ_CP069479.1 See Comparison
NZ_CP069536.1 See Comparison
NZ_CP069472.1 See Comparison
NZ_CP099578.1 See Comparison
NZ_CP103849.1 See Comparison
NZ_CP014430.1 See Comparison
NZ_CP092054.1 See Comparison
NZ_CP081356.1 See Comparison
NZ_CP080559.1 See Comparison
NZ_CP014424.1 See Comparison
NZ_CP014410.1 See Comparison
NZ_CP014433.1 See Comparison
NZ_CP014398.1 See Comparison
NZ_CP014413.1 See Comparison
NZ_CP014393.1 See Comparison
NZ_CP014436.1 See Comparison
NZ_CP009424.1 See Comparison
NZ_CP014421.1 See Comparison
NZ_CP014403.1 See Comparison
NZ_CP014442.1 See Comparison
NZ_CP014439.1 See Comparison
NZ_CP014427.1 See Comparison
NZ_CP007178.1 See Comparison
NC_007790.1 See Comparison
NC_013300.1 See Comparison
NC_013297.1 See Comparison
NC_013295.1 See Comparison
NC_012417.1 See Comparison
NZ_CP043391.1 See Comparison
NC_010428.1 See Comparison
NZ_CP043394.1 See Comparison
NZ_CP043388.1 See Comparison
NZ_CP035370.1 See Comparison
NZ_CP025488.1 See Comparison
NZ_CP014363.1 See Comparison
NZ_CP014372.1 See Comparison
NZ_CP014369.1 See Comparison
NZ_CP014382.1 See Comparison
NZ_CP014366.1 See Comparison
NZ_CP014388.1 See Comparison
NZ_CP014377.1 See Comparison
NZ_CP029668.1 See Comparison
NZ_LR130520.1 See Comparison
NZ_CP120124.1 See Comparison
CP157208.1 See Comparison
NZ_CP129354.1 See Comparison
NZ_CP129359.1 See Comparison
NZ_CP136527.1 See Comparison
NZ_CP136531.1 See Comparison
CP156703.1 See Comparison
CP152326.1 See Comparison
NZ_CP152121.1 See Comparison
CP152321.1 See Comparison
CP154292.1 See Comparison
CP154281.1 See Comparison
CP152324.1 See Comparison
NZ_CP151119.1 See Comparison
NZ_CP131651.1 See Comparison
NZ_CP149460.1 See Comparison
NZ_CP148083.1 See Comparison
CP151576.1 See Comparison
CP151580.1 See Comparison
CP151573.1 See Comparison
CP151564.1 See Comparison
CP150105.1 See Comparison
NZ_CP149808.1 See Comparison
NZ_CP147701.1 See Comparison
NZ_CP147690.1 See Comparison
NZ_CP150659.1 See Comparison
CP150111.1 See Comparison
NZ_CP120113.1 See Comparison
NZ_CP120059.1 See Comparison
NZ_CP120145.1 See Comparison
NZ_CP120049.1 See Comparison
NZ_CP120035.1 See Comparison
NZ_CP120072.1 See Comparison
NZ_CP120176.1 See Comparison
NZ_CP120032.1 See Comparison
NZ_CP120142.1 See Comparison
NZ_CP120136.1 See Comparison
NZ_CP120095.1 See Comparison
NZ_CP120052.1 See Comparison
NZ_CP120203.1 See Comparison
NZ_CP120117.1 See Comparison
NZ_CP120127.1 See Comparison
NZ_CP120019.1 See Comparison
NZ_CP120169.1 See Comparison
NZ_CP120154.1 See Comparison
NZ_CP120098.1 See Comparison
NZ_CP120120.1 See Comparison
NZ_CP120081.1 See Comparison
NZ_CP120040.1 See Comparison
NZ_CP120164.1 See Comparison
NZ_CP120184.1 See Comparison
NZ_CP120043.1 See Comparison
NZ_CP120046.1 See Comparison
NZ_CP120092.1 See Comparison
NZ_CP120178.1 See Comparison
NZ_CP120110.1 See Comparison
NZ_CP120055.1 See Comparison
NZ_CP099578.1 See Comparison
NZ_CP055226.1 See Comparison
NZ_CP103849.1 See Comparison
NZ_CP002150.1 See Comparison
NZ_CP002140.1 See Comparison
NZ_CP002133.1 See Comparison
NZ_CP002142.1 See Comparison
NZ_CP069479.1 See Comparison
NZ_CP069536.1 See Comparison
NZ_CP069472.1 See Comparison
NZ_CP081356.1 See Comparison
NZ_CP092054.1 See Comparison
NZ_CP080559.1 See Comparison
NZ_CP014430.1 See Comparison
NZ_CP014413.1 See Comparison
NZ_CP014393.1 See Comparison
NZ_CP014436.1 See Comparison
NZ_CP014421.1 See Comparison
NZ_CP014403.1 See Comparison
NZ_CP014442.1 See Comparison
NZ_CP014439.1 See Comparison
NZ_CP014424.1 See Comparison
NZ_CP014410.1 See Comparison
NZ_CP014433.1 See Comparison
NZ_CP014398.1 See Comparison
NZ_CP009424.1 See Comparison
NC_013300.1 See Comparison
NZ_CP014427.1 See Comparison
NZ_CP007178.1 See Comparison
NC_013297.1 See Comparison
NC_013295.1 See Comparison
NC_007790.1 See Comparison
NZ_CP014377.1 See Comparison
NC_010428.1 See Comparison
NZ_CP014382.1 See Comparison
NZ_CP014366.1 See Comparison
NC_012417.1 See Comparison
NZ_CP043391.1 See Comparison
NZ_CP043394.1 See Comparison
NZ_CP043388.1 See Comparison
NZ_LR130520.1 See Comparison
NZ_CP035370.1 See Comparison
NZ_CP014363.1 See Comparison
NZ_CP014372.1 See Comparison
NZ_CP014369.1 See Comparison
NZ_CP029668.1 See Comparison
NZ_CP014388.1 See Comparison
NZ_CP025488.1 See Comparison
NZ_CP129354.1 See Comparison
NZ_CP129359.1 See Comparison
NZ_CP136527.1 See Comparison
NZ_CP120124.1 See Comparison
NZ_CP136531.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2