Plasmid CP051968.1

Sequence

Nucleotide Information

Accession CP051968.1
Description Staphylococcus aureus strain ER09615.3 plasmid pER09615.3A.1, complete sequence
Source insd
Topology circular
Length 3125 bp
GC Content 0.29 %
Created at NCBI Sept. 24, 2020



Assembly

Genome Data Information

Accession GCA_014731415.1
Assembly Coverage 110.291


Biosample

Curated Collection Information
Accession 14669408

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 40.7903114N;73.9528738W
Original Query Type coordinates
Coordinates (Lat/Lon) 40.79/-73.95
Address Guggenheim Pavilion, 1190, 5th Avenue, Manhattan Community Board 11, Manhattan, New York County, New York, 10029, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP014430.1 See Comparison
NZ_CP014413.1 See Comparison
NZ_CP014393.1 See Comparison
NZ_CP014436.1 See Comparison
NZ_CP014421.1 See Comparison
NZ_CP014403.1 See Comparison
NZ_CP014442.1 See Comparison
NZ_CP014439.1 See Comparison
NZ_CP014427.1 See Comparison
NZ_CP014424.1 See Comparison
NZ_CP014410.1 See Comparison
NZ_CP014433.1 See Comparison
NZ_CP014398.1 See Comparison
NZ_CP009424.1 See Comparison
NZ_CP007178.1 See Comparison
NC_012417.1 See Comparison
NC_007790.1 See Comparison
NZ_CP043391.1 See Comparison
NZ_CP043394.1 See Comparison
NZ_CP043388.1 See Comparison
NZ_CP014363.1 See Comparison
NZ_CP014372.1 See Comparison
NZ_CP014369.1 See Comparison
NZ_CP014382.1 See Comparison
NZ_CP014366.1 See Comparison
NZ_CP014388.1 See Comparison
NZ_CP014377.1 See Comparison
NZ_CP029668.1 See Comparison
NZ_CP136527.1 See Comparison
NZ_CP136531.1 See Comparison
NZ_CP152121.1 See Comparison
CP157208.1 See Comparison
CP156703.1 See Comparison
NZ_CP148083.1 See Comparison
CP152326.1 See Comparison
CP154292.1 See Comparison
NZ_CP150659.1 See Comparison
CP151576.1 See Comparison
CP151580.1 See Comparison
CP151573.1 See Comparison
NZ_CP147701.1 See Comparison
NZ_CP149808.1 See Comparison
NZ_CP002150.1 See Comparison
NZ_CP147690.1 See Comparison
CP150105.1 See Comparison
CP150111.1 See Comparison
NZ_CP002140.1 See Comparison
NZ_CP029668.1 See Comparison
NZ_CP002133.1 See Comparison
NZ_CP002142.1 See Comparison
NZ_CP014430.1 See Comparison
NZ_CP007178.1 See Comparison
NZ_CP043391.1 See Comparison
NZ_CP043394.1 See Comparison
NZ_CP043388.1 See Comparison
NZ_CP014363.1 See Comparison
NZ_CP014372.1 See Comparison
NZ_CP014369.1 See Comparison
NZ_CP014382.1 See Comparison
NZ_CP014366.1 See Comparison
NZ_CP014388.1 See Comparison
NZ_CP014377.1 See Comparison
NZ_CP014413.1 See Comparison
NZ_CP014393.1 See Comparison
NZ_CP014436.1 See Comparison
NZ_CP014421.1 See Comparison
NZ_CP014403.1 See Comparison
NZ_CP014442.1 See Comparison
NZ_CP014439.1 See Comparison
NZ_CP014427.1 See Comparison
NZ_CP014424.1 See Comparison
NZ_CP014410.1 See Comparison
NZ_CP014433.1 See Comparison
NZ_CP014398.1 See Comparison
NZ_CP009424.1 See Comparison
NC_012417.1 See Comparison
NC_007790.1 See Comparison
NZ_CP136527.1 See Comparison
NZ_CP136531.1 See Comparison
CP157208.1 See Comparison
CP156703.1 See Comparison
CP152326.1 See Comparison
NZ_CP152121.1 See Comparison
CP154292.1 See Comparison
NZ_CP147690.1 See Comparison
CP151576.1 See Comparison
CP151580.1 See Comparison
CP151573.1 See Comparison
NZ_CP149808.1 See Comparison
NZ_CP147701.1 See Comparison
NZ_CP148083.1 See Comparison
NZ_CP150659.1 See Comparison
NZ_CP002150.1 See Comparison
CP150105.1 See Comparison
CP150111.1 See Comparison
NZ_CP002140.1 See Comparison
NC_007790.1 See Comparison
NZ_CP002133.1 See Comparison
NZ_CP002142.1 See Comparison
NZ_CP014413.1 See Comparison
NZ_CP014393.1 See Comparison
NZ_CP014436.1 See Comparison
NZ_CP014421.1 See Comparison
NZ_CP014403.1 See Comparison
NZ_CP014442.1 See Comparison
NZ_CP014439.1 See Comparison
NZ_CP014427.1 See Comparison
NZ_CP014424.1 See Comparison
NZ_CP014410.1 See Comparison
NZ_CP014433.1 See Comparison
NZ_CP014398.1 See Comparison
NZ_CP007178.1 See Comparison
CP051968.1 See Comparison
NZ_CP014430.1 See Comparison
NZ_CP009424.1 See Comparison
NZ_CP014363.1 See Comparison
NC_012417.1 See Comparison
NZ_CP043391.1 See Comparison
NZ_CP043394.1 See Comparison
NZ_CP043388.1 See Comparison
NZ_CP014372.1 See Comparison
NZ_CP014369.1 See Comparison
NZ_CP014382.1 See Comparison
NZ_CP014366.1 See Comparison
NZ_CP014388.1 See Comparison
NZ_CP014377.1 See Comparison
NZ_CP029668.1 See Comparison
CP156703.1 See Comparison
NZ_CP136527.1 See Comparison
NZ_CP136531.1 See Comparison
NZ_CP152121.1 See Comparison
CP152326.1 See Comparison
CP157208.1 See Comparison
CP154292.1 See Comparison
NZ_CP148083.1 See Comparison
CP151576.1 See Comparison
CP151580.1 See Comparison
CP151573.1 See Comparison
NZ_CP150659.1 See Comparison
NZ_CP002150.1 See Comparison
NZ_CP149808.1 See Comparison
NZ_CP147701.1 See Comparison
NZ_CP147690.1 See Comparison
CP150105.1 See Comparison
CP150111.1 See Comparison
NZ_CP002140.1 See Comparison
NZ_CP002133.1 See Comparison
NZ_CP002142.1 See Comparison
NZ_CP014363.1 See Comparison
NZ_CP014424.1 See Comparison
NZ_CP014410.1 See Comparison
NZ_CP014433.1 See Comparison
NZ_CP014398.1 See Comparison
NZ_CP009424.1 See Comparison
NC_007790.1 See Comparison
NZ_CP014430.1 See Comparison
NZ_CP014413.1 See Comparison
NZ_CP014393.1 See Comparison
NZ_CP014436.1 See Comparison
NZ_CP014421.1 See Comparison
NZ_CP014403.1 See Comparison
NZ_CP014442.1 See Comparison
NZ_CP014439.1 See Comparison
NZ_CP014427.1 See Comparison
NZ_CP007178.1 See Comparison
NC_012417.1 See Comparison
NZ_CP043391.1 See Comparison
NZ_CP043394.1 See Comparison
NZ_CP043388.1 See Comparison
NZ_CP014382.1 See Comparison
NZ_CP014366.1 See Comparison
NZ_CP014388.1 See Comparison
NZ_CP014377.1 See Comparison
NZ_CP014372.1 See Comparison
NZ_CP014369.1 See Comparison
NZ_CP029668.1 See Comparison
NZ_CP136527.1 See Comparison
NZ_CP136531.1 See Comparison
NZ_CP150659.1 See Comparison
CP157208.1 See Comparison
CP154292.1 See Comparison
CP151576.1 See Comparison
CP151580.1 See Comparison
CP151573.1 See Comparison
CP156703.1 See Comparison
NZ_CP152121.1 See Comparison
CP152326.1 See Comparison
NZ_CP149808.1 See Comparison
NZ_CP148083.1 See Comparison
NZ_CP147701.1 See Comparison
NZ_CP002133.1 See Comparison
NZ_CP002150.1 See Comparison
NZ_CP002140.1 See Comparison
NZ_CP147690.1 See Comparison
CP150105.1 See Comparison
CP150111.1 See Comparison
NZ_CP002142.1 See Comparison
NZ_CP014430.1 See Comparison
NZ_CP014413.1 See Comparison
NZ_CP014393.1 See Comparison
NZ_CP014433.1 See Comparison
NZ_CP014436.1 See Comparison
NZ_CP014421.1 See Comparison
NZ_CP014398.1 See Comparison
NZ_CP014403.1 See Comparison
NZ_CP014442.1 See Comparison
NZ_CP014439.1 See Comparison
NZ_CP014427.1 See Comparison
NZ_CP014424.1 See Comparison
NZ_CP009424.1 See Comparison
NZ_CP014410.1 See Comparison
NC_007790.1 See Comparison
NZ_CP007178.1 See Comparison
NZ_CP014382.1 See Comparison
NC_012417.1 See Comparison
NZ_CP043391.1 See Comparison
NZ_CP043394.1 See Comparison
NZ_CP043388.1 See Comparison
NZ_CP014366.1 See Comparison
NZ_CP014388.1 See Comparison
NZ_CP014377.1 See Comparison
NZ_CP136527.1 See Comparison
NZ_CP014363.1 See Comparison
NZ_CP014372.1 See Comparison
NZ_CP014369.1 See Comparison
NZ_CP029668.1 See Comparison
NZ_CP136531.1 See Comparison
CP151576.1 See Comparison
CP157208.1 See Comparison
CP154292.1 See Comparison
CP152326.1 See Comparison
CP156703.1 See Comparison
NZ_CP152121.1 See Comparison
CP151580.1 See Comparison
CP151573.1 See Comparison
NZ_CP150659.1 See Comparison
NZ_CP149808.1 See Comparison
NZ_CP148083.1 See Comparison
NZ_CP147701.1 See Comparison
NZ_CP147690.1 See Comparison
NZ_CP002150.1 See Comparison
CP150105.1 See Comparison
CP150111.1 See Comparison
NZ_CP002140.1 See Comparison
NZ_CP002133.1 See Comparison
NZ_CP002142.1 See Comparison
NZ_CP014430.1 See Comparison
NZ_CP014433.1 See Comparison
NZ_CP014398.1 See Comparison
NZ_CP014413.1 See Comparison
NZ_CP014393.1 See Comparison
NZ_CP009424.1 See Comparison
NZ_CP014436.1 See Comparison
NZ_CP014421.1 See Comparison
NZ_CP014403.1 See Comparison
NZ_CP014442.1 See Comparison
NZ_CP014439.1 See Comparison
NZ_CP014427.1 See Comparison
NZ_CP014424.1 See Comparison
NZ_CP014410.1 See Comparison
NC_012417.1 See Comparison
NC_007790.1 See Comparison
NZ_CP007178.1 See Comparison
NZ_CP043388.1 See Comparison
NZ_CP014388.1 See Comparison
NZ_CP043391.1 See Comparison
NZ_CP043394.1 See Comparison
NZ_CP014377.1 See Comparison
CP157208.1 See Comparison
NZ_CP014363.1 See Comparison
NZ_CP014372.1 See Comparison
NZ_CP014369.1 See Comparison
NZ_CP014382.1 See Comparison
NZ_CP014366.1 See Comparison
NZ_CP029668.1 See Comparison
NZ_CP136527.1 See Comparison
NZ_CP136531.1 See Comparison
CP156703.1 See Comparison
CP154292.1 See Comparison
NZ_CP152121.1 See Comparison
CP152326.1 See Comparison
NZ_CP147690.1 See Comparison
NZ_CP148083.1 See Comparison
NZ_CP150659.1 See Comparison
CP151576.1 See Comparison
CP151580.1 See Comparison
CP151573.1 See Comparison
NZ_CP149808.1 See Comparison
NZ_CP147701.1 See Comparison
CP150105.1 See Comparison
CP150111.1 See Comparison
NZ_CP009424.1 See Comparison
NZ_CP002150.1 See Comparison
NZ_CP002140.1 See Comparison
NZ_CP002133.1 See Comparison
NZ_CP002142.1 See Comparison
NZ_CP014430.1 See Comparison
NZ_CP014413.1 See Comparison
NZ_CP014393.1 See Comparison
NZ_CP014436.1 See Comparison
NZ_CP014421.1 See Comparison
NZ_CP014403.1 See Comparison
NZ_CP014442.1 See Comparison
NZ_CP014439.1 See Comparison
NZ_CP014427.1 See Comparison
NZ_CP014424.1 See Comparison
NZ_CP014410.1 See Comparison
NC_007790.1 See Comparison
NZ_CP014433.1 See Comparison
NZ_CP014398.1 See Comparison
NC_012417.1 See Comparison
NZ_CP007178.1 See Comparison
NZ_CP152121.1 See Comparison
NZ_CP043391.1 See Comparison
NZ_CP043394.1 See Comparison
NZ_CP043388.1 See Comparison
NZ_CP014363.1 See Comparison
NZ_CP014372.1 See Comparison
NZ_CP014369.1 See Comparison
NZ_CP014382.1 See Comparison
NZ_CP014366.1 See Comparison
NZ_CP014388.1 See Comparison
NZ_CP029668.1 See Comparison
NZ_CP136527.1 See Comparison
NZ_CP136531.1 See Comparison
NZ_CP014377.1 See Comparison
CP157208.1 See Comparison
CP156703.1 See Comparison
CP151576.1 See Comparison
CP154292.1 See Comparison
CP152326.1 See Comparison
CP151580.1 See Comparison
CP151573.1 See Comparison
NZ_CP149808.1 See Comparison
NZ_CP148083.1 See Comparison
NZ_CP147701.1 See Comparison
NZ_CP150659.1 See Comparison
NZ_CP147690.1 See Comparison
NZ_CP002150.1 See Comparison
NZ_CP002140.1 See Comparison
CP150105.1 See Comparison
CP150111.1 See Comparison
NZ_CP002133.1 See Comparison
NZ_CP002142.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2