Plasmid NZ_CP014363.1
Sequence
Nucleotide Information
Accession | NZ_CP014363.1 |
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Description | Staphylococcus aureus strain USA300-SUR1 plasmid pUSA01-1-SUR1, complete sequence |
Source | refseq |
Topology | circular |
Length | 3125 bp |
GC Content | 0.29 % |
Created at NCBI | Oct. 4, 2018 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Staphylococcus aureus (1280) |
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Lineage
Superkingdom | Bacteria (2) |
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Phylum | Bacillota (1239) |
Class | Bacilli (91061) |
Order | Bacillales (1385) |
Family | Staphylococcaceae (90964) |
Genus | Staphylococcus (1279) |
Species | Staphylococcus_aureus (1280) |
Strain |
Biosample
Curated Collection Information
Accession | 4497595 |
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PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query | 5.866667N;55.166667W |
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Original Query Type | coordinates |
Coordinates (Lat/Lon) | 5.87/-55.17 |
Address | Nieuwe Charlesburgweg, Rainville, Paramaribo, Suriname |
ECOSYSTEM
Original Query | Homo sapiens,Perineum |
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Classification | genital,host_associated |
Host-associated Taxon |
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DISEASE
Original Query | None |
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DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
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Purples
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Oranges
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100
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B
Source | Element Name | Display | Sequence | Favorite |
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PGAG | protein rep | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
MOB-typer | MOB_unknown | copy | ||
MOB-typer | rep_cluster_1017 | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 5 of 5 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
oriT | NZ_AGFM01000123 | MOB_unknown | 1066 | 1231 | plus | 100 | 100 | 2.42e-81 | 307 |
replicon | CP002144 | rep_cluster_1017 | 1 | 996 | plus | 99.9 | 100 | 0 | 1834 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
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NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |